Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq6215 150 3e-31 seq6099 143 4e-29 >seq6215 Length=22149898 Score = 150 bits (166), Expect = 3e-31 Identities = 160/211 (76%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 8375 CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8434 ||||||||||||||||||||||||||| | |||||||||||| |||| ||| || || Sbjct 21085328 CCGCCGAAGGTGCTGGGCTTCCAGTACTCGGGGGAGCAGATGGGGTTCCCCAGCAGCCCC 21085269 Query 8435 TTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8494 ||||||||||| || ||||| | ||| | |||||||| || ||||||||||||| | Sbjct 21085268 TTGAGGGAGAAGGGGGCCCCGATCTCCACCATGCTCTCCCCAAAGATGGCGTTGGCTTGC 21085209 Query 8495 GGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCC 8554 ||||| |||| || | || | ||| | ||||| || |||| ||| ||||| || || Sbjct 21085208 GGCTTCTCCAGCAGCAGCCCCGGGTAGAACTCCAGGGCGTCGATGTCGCCGTACAGCTCC 21085149 Query 8555 CTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || | || || |||||| ||||||| Sbjct 21085148 GCCAGCTGCGCCGCCTTCTCCTCCTCTCCTG 21085118 Score = 104 bits (114), Expect = 3e-17 Identities = 181/257 (70%), Gaps = 6/257 (2%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| | |||||| || | |||||||| || |||||||| | ||| || || Sbjct 21083711 TCACCGATGAGGATGAGCCGGGCCGTCTGGAAGAGCTGCTCGTCGCCCCACGTCGGGTGC 21083652 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || || ||||| | || || || | |||||| || | |||||||| || ||||||||| Sbjct 21083651 TCCTGCTTCAGCATGTCACAGACGCGGTTGTGCTCGCGGAGCCAGAGGGTTGCGTACATC 21083592 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 || ||||| || | || ||||| |||| || || || ||||| || || | |||| Sbjct 21083591 ATCAGCCCGGGCAGGAGCCCAAACACCTCCTGGCCCACGGCCAGCTGC-TGGTGCTGGGC 21083533 Query 9412 ACT-TCGGGAGGATAGATCATGTGCACCTGGACGTCT--TTGACCGAGGGGGGATACATT 9468 | || || ||||||||||||| |||| || || |||| ||| || |||| Sbjct 21083532 GGTGCCGTTGGGGTAGATCATGTGCA-CTGG-CGCCTGGAGCACCGTGGGCGGGTACACC 21083475 Query 9469 TCACCGTCAATCATCTG 9485 || ||||| | || ||| Sbjct 21083474 TCCCCGTCCACCACCTG 21083458 >seq6099 Length=15850405 Score = 143 bits (158), Expect = 4e-29 Identities = 211/299 (71%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 8300 AACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATC 8359 || ||||| ||||| |||||| | |||| || || | | || | ||||| || Sbjct 5122142 AAGGGACAACCCTTTACGTTGTTGCAGATGAGTTTTTGCAGGGAGGCAGTGTTGACTATT 5122083 Query 8360 CCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACG 8419 | || || || ||| || || ||||| |||||||||||| | || |||||||| | Sbjct 5122082 TCAAAGCCTACTCTTCCACCAAAAGTGCTAGGCTTCCAGTACTCAGGAGAGCAGATAGCA 5122023 Query 8420 TTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAG 8479 || |||| |||||||| | ||||| || || || | ||| | || ||||||| ||| Sbjct 5122022 TTTCCCATCAGGCCTTTCAACGAGAATGGTGCTCCAAGCTCTACCATAGTCTCACCAAAG 5121963 Query 8480 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACG 8539 ||||| |||||||||||||| || || | || | |||||||||| ||| || | | Sbjct 5121962 ATGGCTCCTGGACGGGGCTTTTCTACTAACAGACCAGGATACAGCTCCATAGCATCAATG 5121903 Query 8540 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGTTTTATTAATAAA 8598 ||||| ||||| | ||||| || || || || ||||||||| |||||| ||| Sbjct 5121902 TCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTAAAATATTAACAAA 5121844 Score = 111 bits (122), Expect = 2e-19 Identities = 169/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||||| || || ||||| | | || ||| ||||||||||||||| || || || Sbjct 5119727 ATGAGTCTGGTAGTTTGGAATAACCGTTCATCATCCCATTCTGGATGTTCCTGCTTAAGG 5119668 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | || || |||| |||||| ||||||||||| || || || |||||||| | || || Sbjct 5119667 ATGTCACAGACCCGGTTGTGCTCCCTGAGCCATATGGTAGCATACATCATTAAACCTGGG 5119608 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 ||||| ||||| |||| || || |||| | | | | || || || | |||||| Sbjct 5119607 ACCAGACCAAACACCTCCTGTCCTACAGAGAATTGTAGATGCTCAGGAACATGAGGAGGA 5119548 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 || ||||| | | || || || || | || || |||||||| || |||||||| Sbjct 5119547 TACATCATTTCTGCTTGAGTATCCTTCACTGTTGGAGGGTACATTTCTCCACCAATCATC 5119488 Query 9484 T 9484 | Sbjct 5119487 T 5119487 Score = 87.8 bits (96), Expect = 3e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 9709 ||||||||||| || || ||||| |||||||| || ||| ||||||| |||| Sbjct 5118613 CTTACCCCATGCCCAAGGCCTTTTGTGAAGGCTGGTCCTTTGTGGTGATCAGTCTTAAAG 5118554 Query 9710 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 9769 |||||||| ||||| ||||| |||| || | ||||| | || |||| ||| ||||| Sbjct 5118553 AACTGGTGGGTGAAGTGTTGAGCAAAGAATGTGAACATAATATTTGTGCTCTGTGGATCT 5118494 Query 9770 GGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 9807 ||| | || | ||| || ||| || |||||||| Sbjct 5118493 GGAATAAATTTTTTCCTCAGCAGAAACTTCTCCACAAC 5118456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716813230949760