Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20mississippiensis_20[refseq_20GCF_5F000281125.3_202016- 03-28] 7,094 sequences; 2,161,730,208 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2185 145 2e-29 >seq2185 Length=13751209 Score = 145 bits (160), Expect = 2e-29 Identities = 158/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || |||||||| || || || || || || ||||| |||||||||| ||| || | Sbjct 8329665 CAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTCGAGGTGG--AGCCCAGTG 8329722 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| |||||||| || ||||| |||||||||||||| || || || ||||||| Sbjct 8329723 ACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCCGACCAGC 8329782 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| ||||||||| | || || |||| || ||| Sbjct 8329783 AGAGGCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAACA 8329842 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 8329843 TCCAGAAGGAGTCCACCCTGCACCTGGT 8329870 Score = 145 bits (160), Expect = 2e-29 Identities = 158/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || ||||| || || || || || || ||||| |||||||||| ||| || | Sbjct 8329893 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTCGAGGTGG--AGCCCAGTG 8329950 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| ||||||||||| || ||||| |||||||||||||| || || || ||||||| Sbjct 8329951 ACACTATCGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCCGACCAGC 8330010 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || |||||||| |||||||| | ||||| |||| || ||| Sbjct 8330011 AGAGGCTCATCTTTGCTGGGAAACAGCTAGAAGATGGCCGCACTCTGTCCGACTACAACA 8330070 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 8330071 TCCAGAAGGAGTCCACCCTGCACCTGGT 8330098 Score = 136 bits (150), Expect = 1e-26 Identities = 165/222 (74%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| || |||| | || |||||||| || || || || || || ||||| ||||||| Sbjct 8328970 AGGTAAACATGC---AGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTCGAGG 8329026 Query 177970 TGGAAAGCTCA--GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 ||| ||| || |||||||| ||||| || || ||||| |||||||||||||| || Sbjct 8329027 TGG--AGCCCAGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCAT 8329084 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 || || |||||||| | || ||||| || || || ||||| ||||||||| | || || Sbjct 8329085 TCCCCCCGACCAGCAGAGGCTCATCTTTGCTGGTAAGCAGCTGGAAGATGGACGCACCCT 8329144 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | || || ||| |||| || || || || ||||| || || Sbjct 8329145 GTCTGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGT 8329186 Score = 136 bits (150), Expect = 1e-26 Identities = 156/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || || ||||| |||||||| || ||| Sbjct 8330121 CAGATCTTCGTGAAGACCCTGACCGGCAAGACCATTACCCTGGAGGTGGA--GCCCAGTG 8330178 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| |||||||| || ||||| |||||||||||||| || || || ||||||| Sbjct 8330179 ACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCCGACCAGC 8330238 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || |||| || ||| Sbjct 8330239 AGAGGCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACA 8330298 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 8330299 TCCAGAAGGAGTCTACCCTGCACCTGGT 8330326 Score = 131 bits (144), Expect = 4e-25 Identities = 155/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || ||||||||||| || || || || || || |||||| | ||||| | ||| || | Sbjct 8329437 CAGATTTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTTG--AGCCCAGTG 8329494 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||| ||||| || ||||| |||||||||||||| || || || ||||||| Sbjct 8329495 ACACCATCGAAAACGTGAAGGCCAAGATCCAGGACAAAGAAGGTATTCCCCCTGACCAGC 8329554 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || |||||||| |||||||| | || || |||| || || Sbjct 8329555 AGAGGCTCATCTTTGCTGGGAAACAGCTGGAAGATGGCCGCACCCTGTCCGACTACAATA 8329614 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 | || || || || || ||||| || || Sbjct 8329615 TTCAGAAGGAGTCCACCCTGCACCTGGT 8329642 Score = 118 bits (130), Expect = 3e-21 Identities = 152/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || ||||| |||||||| || || ||| Sbjct 8329209 CAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTCGAGGTTGA--GCCCAGTG 8329266 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| ||||||||||| || ||||| |||||||| || || || || || ||||||| Sbjct 8329267 ACACTATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAGC 8329326 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || | ||||| || Sbjct 8329327 AGAGGCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGATTACAATA 8329386 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 | || || || || || ||||| || || Sbjct 8329387 TTCAGAAGGAGTCCACCCTGCACCTGGT 8329414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203621790614236