Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq448 104 2e-17 >seq448 Length=1749325 Score = 104 bits (114), Expect = 2e-17 Identities = 100/126 (79%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 101753 GTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCT 101812 || ||||||||||||||| | || | || ||||| || |||||||| || ||||||||| Sbjct 713142 GTCACATGAGCAATCATGTACGTGAGCAGTGAATAACTGGCAATGTTGAAAGGCACTCCT 713201 Query 101813 AACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCA-TCACAGACATA 101871 | |||||||| | ||||| |||||||| || || ||||||| ||| | ||| ||||| Sbjct 713202 AGTCCCATATCTCCAGATCTCTGATACAGCTGGCAAGAAAGCTCACCATTTACA-ACATA 713260 Query 101872 AAATTG 101877 ||||| Sbjct 713261 GAATTG 713266 Score = 91.5 bits (100), Expect = 1e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||||||||| ||||| ||||| ||||| || || ||||| |||||||| | ||| |||| Sbjct 715761 CTTTATATTCCGCTCCAAAATGTCTCCATTGGAAACCATAAACAGGTCCTAAATCCCCTT 715820 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | ||||| ||||| ||||||| || || | |||||||| |||||||||| Sbjct 715821 CCATTCTGTGGGTGAAACCTTGTTTATCCAAGAACTCGCGTGATCCATTGGCATCCCAAA 715880 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTT 102180 | | || || | | || |||||||| Sbjct 715881 TCTTGACTCCCTTTTCGGAGAGCTCTTT 715908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361210179587567