Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq489 116 4e-21 seq178 105 8e-18 seq718 87.8 2e-12 >seq489 Length=1618624 Score = 116 bits (128), Expect = 4e-21 Identities = 123/161 (76%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 24133 AACATGCGAAAT-CGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTG 24191 |||||| | ||| | | |||| |||| ||||| ||||| | || ||||| || || Sbjct 408004 AACATGTGTAATGCTCTATGTATTACCTCATCTCTGCTAATGAGCTCATTGGAGAAAGTC 408063 Query 24192 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAG 24251 ||||| ||||| | ||| | ||| || ||||||||||||| ||||| ||||| || ||| Sbjct 408064 AGTCCAGGCATCAAGCCTCTCTTCTTCAGCCAAAATATGGCAGCAAAAGATCCTGAGAAG 408123 Query 24252 AAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCC 24292 || |||||||| ||||| |||||||||| | ||| || || Sbjct 408124 AAGATTCCTTCCACTGCAGCAAAGGCAACCACTCTCTCCCC 408164 >seq178 Length=3009335 Score = 105 bits (116), Expect = 8e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| |||||||| || | || || ||||| |||||||| ||||||| || | || | Sbjct 616908 CCTCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 616849 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | | |||||| ||||| ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 616848 TCAACCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 616789 Query 24277 C 24277 | Sbjct 616788 C 616788 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||||| | || || || || | ||||| |||||||| |||||||||||||| ||||| Sbjct 613726 ATCTTTTATGTAAGTGTCTATAAGCAGACTGTACATTTCTGAATGAATGTTTTCCATGGC 613667 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 || || || || || ||||| | ||| || || ||||| |||||| Sbjct 613666 AATCTGGAAGCCATAAAAACAGCGAGCTTCTGTGATCTGCACTTCT 613621 >seq718 Length=1082811 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 54029 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 54088 || |||||||| ||||||||||||||||| || || | || || || || | || || Sbjct 694186 ACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCCCTAGCTCGCTGC 694245 Query 54089 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 54148 ||||| || || || ||||| || | |||||| ||| | | || || | |||||||| Sbjct 694246 TCCTCCTTCCCGGTGTTCTTCTTCAAATCGAGAAACTCAAAGATGTCCAAGTGCCACGGC 694305 Query 54149 TCCAAGTATATGG 54161 |||| ||| |||| Sbjct 694306 TCCAGGTAAATGG 694318 Score = 86.0 bits (94), Expect = 7e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||| ||||| || | |||| || ||||| || ||||||||||| || || | Sbjct 686352 ACCTGAAACTCTCCTGAGAGGACTCGGCGTGTGTAGATGTTACTGGTATAGGGCTCGATG 686411 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGG 53256 || |||||||| |||||||| ||||| || || ||||| ||||| || Sbjct 686412 GATTCATTATTGCCCAAAATCTGAGCCGTGGAAGCAGTTGGCATTGG 686458 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 53758 TATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 53817 ||| || ||||| || || || ||||||||||| || | || || || || ||||| Sbjct 692990 TATTTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCG 693049 Query 53818 GTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAAT 53877 |||||| | |||||||| || ||| | || ||||| || ||| ||||||| || || || Sbjct 693050 GTTACAAGAGTCCTTATACAGCATGTAAGGGGTACCGGTCTCAGTCTGGGACTCAATGAT 693109 Query 53878 CGCTTTCCAGA 53888 || | ||||| Sbjct 693110 GGCATACCAGA 693120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593652453698160