Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq473 87.8 2e-12 >seq473 Length=1671449 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 ||||||| ||||||||||| || ||||| || || || | |||||| |||| || | Sbjct 239342 CCTGGTGTCCGAACTGGTTGCAGGGGAAGCCCAGGACGAGCAGCCCGCGAGGCCCGTACC 239283 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 || |||||||||||| | ||| | | || ||| ||||| | |||||||| || || | Sbjct 239282 GCTCCTGCAGCTCGTTGAGCTGCACGAAGTCGCGGGCCGTGGTGCCTCAGAGCGAAGCCA 239223 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCC 83536 |||| || || | ||||||||| Sbjct 239222 CGTTGGAGACCAGGAGCACCCGGCCC 239197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608725898002680