Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq780 154 2e-32 seq5 140 3e-28 seq170 96.9 4e-15 seq489 87.8 2e-12 >seq780 Length=1004500 Score = 154 bits (170), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| |||| || || ||| Sbjct 815606 ATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 815547 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | |||||||| ||||| ||| | ||||| Sbjct 815546 GACACCATTGAGAACG-TGAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCA 815488 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| ||||| || || | |||||||| ||||||||| Sbjct 815487 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTAGAAGATGGCCGCACCCTGTCCGACTACAA 815428 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| |||||||| ||| |||| | ||||||||| Sbjct 815427 CATCCAGAAGGAATCCACCCTGCATCTGGTGCTGCGTCTCAGGGGCGGC 815379 Score = 141 bits (156), Expect = 1e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || || || ||||| ||||||||| |||| || || || Sbjct 815837 AACATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTTGAGCCC 815778 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | | |||| || || | |||||||| ||||| ||| | ||| Sbjct 815777 AGTGACACCATTGAGAATGTGAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGAC 815718 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | || |||| || ||||| ||||| || || | |||||||| |||||| Sbjct 815717 CAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTGTCTGACTAC 815658 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||| |||| ||||| || ||| |||| | ||||||||| Sbjct 815657 AACATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGTCTCAGGGGCGGC 815607 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| |||| || || ||| Sbjct 815378 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 815319 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | |||||||| ||||| ||| | |||||| Sbjct 815318 GACACCATTGAGAATGTGAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 815259 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| ||||| || || | |||||||| |||||||||| Sbjct 815258 CAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTGTCCGACTACAAC 815199 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||| |||| |||||||| ||| |||| | ||||| || Sbjct 815198 ATCCAGAAGGAATCCACCCTGCATCTGGTGCTGCGTCTCAGGGGTGG 815152 >seq5 Length=7401140 Score = 140 bits (154), Expect = 3e-28 Identities = 170/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || ||||| || || || || ||||| |||||||| | || || || | Sbjct 630258 AAACATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACTCTTGAGGTGGAGCC 630317 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 || |||| | | | | | |||| || || | ||||| |||||||| ||| | || Sbjct 630318 CAGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGA 630377 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | ||||||| || || || |||||||| || | |||||||| ||||| Sbjct 630378 CCAGCAGAGGCTCATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTA 630437 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| || |||| ||||| || ||| |||||||||| || ||| Sbjct 630438 CAACATCCAGAAAGAATCCACCCTGCACCTGGTGCTGCGCTTGAGAGGTGGC 630489 >seq170 Length=3082526 Score = 96.9 bits (106), Expect = 4e-15 Identities = 76/91 (84%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || |||||| |||||||||| |||||||||| |||||||| |||||||| || | ||| Sbjct 1220222 GGTATCCCCCCGGACCAGCAGCGACTCATCTTTGCGGGCAAGCAGCTGGAAGATGGCCGC 1220163 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGG 40882 || || |||||||||||||||||||| || Sbjct 1220162 ACTCTGTCCGACTACAACATCCAGAAGGTGG 1220132 >seq489 Length=1618624 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| ||||| || || || || || ||||||| || || ||| || |||||||||| Sbjct 408154 TGGTTGCCTTTGCTGCAGTGGAAGGAATCTTCTTCTCAGGATCTTTTGCTGCCATATTTT 408095 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| | ||| | ||||| || ||||||||| ||| |||||||| ||| | Sbjct 408094 GGCTGAAGAAGAGAGGCTTGATGCCTGGACTGACTTTCTCCAATGAGCTCATTAGCAGAG 408035 Query 117162 ACGAGG 117167 | |||| Sbjct 408034 ATGAGG 408029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515159196283920