Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq448 89.7 8e-13 >seq448 Length=1749325 Score = 89.7 bits (98), Expect = 8e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 205716 TGTATCCATATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACC 205775 ||||| |||||| |||||| || |||||||| | |||||| ||||||||||| || || Sbjct 715750 TGTATTCATATCTTTATATTCCGCTCCAAAATGTCTCCATTGGAAACCATAAACAGGTCC 715809 Query 205776 TAAATCACCTTCTTTTCTATCATTAAAACCACGtttttttATATATTTTAATGATCCATT 205835 |||||| ||||| |||| | | ||||| |||| | | | | ||||||||| Sbjct 715810 TAAATCCCCTTCCATTCTGTGGGTGAAACCTTGTTTATCCAAGAACTCGCGTGATCCATT 715869 Query 205836 TTCATCCCAAATATGGATTCCTTT 205859 |||||||||| | || ||| || Sbjct 715870 GGCATCCCAAATCTTGACTCCCTT 715893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755368017705600