Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq910 132 9e-26 seq1279 131 3e-25 >seq910 Length=787505 Score = 132 bits (146), Expect = 9e-26 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 51895 GCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCATA 51954 || ||||||| ||||||| | |||||||| || ||||||||||| || ||||||||||| Sbjct 100831 GCTTTATGGTGGTACTATGTCTCCAAAGGAATTGAATACTTGGACACAGTATTTTTCATC 100772 Query 51955 CTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGTTT 52014 || |||| |||||||| || | ||||| || || || |||||||||| ||| ||||| Sbjct 100771 CTGCGGAAGAAATTTAACCAAATCAGTTTCCTTCATGTTTATCATCATTGTACCATGTTC 100712 Query 52015 ACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCA 52055 || | | ||||| || || || ||| |||| ||||| || Sbjct 100711 ACCTTGTGGTGGATTGGAATCAAGTGGGTTGCAGGAGGACA 100671 Score = 98.7 bits (108), Expect = 2e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 || |||||||||||||| ||||| | ||||| |||||| ||||||||| || ||||| Sbjct 98199 GCTTTTTTTGGAGCTCATATAAATGCATTTATTCATGTTGTTATGTACATGTACTATGGA 98140 Query 52117 ATGGCCGCTTGTGGTCCTATGTTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTATA 52176 | || || ||||| |||| | || ||||| || ||||||||||| || | || ||| Sbjct 98139 TTAGCTGCCTGTGGCCCTAAAGTTAGGAAGTACCTCTGGTGGAAACGATACTTGACCATA 98080 Query 52177 ATGCAGTTGGTA 52188 | || |||||| Sbjct 98079 CTACAATTGGTA 98068 >seq1279 Length=365951 Score = 131 bits (144), Expect = 3e-25 Identities = 189/264 (72%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 52066 GGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGTATGGCCGCT 52125 || ||||| ||||| | ||||| |||||| ||||||||| || |||| | || || Sbjct 358034 GGGGCTCATATAAATGCATTTATTCATGTTGTTATGTACATGTACTATGAATTAGCTGCC 357975 Query 52126 TGTGGTCCTAT-GTTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTATAATGCAGTT 52184 ||||| |||| |||||| | ||| || ||||||||||| || | || ||| | || || Sbjct 357974 TGTGGCCCTAAAGTTCAGCA-GTACCTCTGGTGGAAACGATACTTGACCATACTACAATT 357916 Query 52185 GGTACAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTT 52244 ||| ||||||||| || | | | ||| || ||| ||||| || |||| || || Sbjct 357915 GGTTCAGTTCCATGCGACTTTTAGCCGTACAGCCTGGTCTATTTATATTGATTATCCCTT 357856 Query 52245 TCCAAAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGG 52304 ||| |||||||| || ||| || ||| ||||| || | | || || | ||||||| Sbjct 357855 TCCCAAATGGATGCACTGGGGTGTAATTTTCTATGCTGTCACCTTTATTCTCTTGTTTGG 357796 Query 52305 TAACTTCTATTTTAGAACATACAA 52328 |||||||| | | | ||||| || Sbjct 357795 CAACTTCTACTATTGGACATATAA 357772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923089282192680