Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq178 95.1 1e-14 seq489 82.4 7e-11 >seq178 Length=3009335 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || ||||| || | ||| || ||||| || || || ||||||| ||||| ||| || Sbjct 616906 TCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 616847 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | |||||| || | ||||| || ||||||||||| || ||||| ||||| ||||| || Sbjct 616846 AACCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGCT 616787 Query 16379 AC 16380 || Sbjct 616786 AC 616785 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 15926 TTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTT 15985 || ||||| ||| ||| | |||||||| | ||||||||||||||||| ||||| || Sbjct 618277 TTCGACATGACTCCCATCCTCTGATATTCTCCTACTCTCTTTTCAAAGAAGTTTGTCTTG 618218 Query 15986 CCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATT 16023 ||||| | |||||| || |||||||| ||||| ||||| Sbjct 618217 CCTTCAAGTGAAATGTTCTCCATAAAGTCAAATGGATT 618180 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 16505 ATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGA 16564 || ||||| ||||| || | ||| ||||||||||||||||| || ||||| || ||||| Sbjct 613719 ATGTAAGTGTCTATAAGCAGACTGTACATTTCTGAATGAATGTTTTCCATGGCAATCTGG 613660 Query 16565 AAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 || |||||||| || | |||||| | || || ||||| Sbjct 613659 AAGCCATAAAAACAGCGAGCTTCTGTGATCTGCACTTC 613622 >seq489 Length=1618624 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 15886 TTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTT 15945 ||||||||| ||| | || ||||| || ||| || | | || ||| || | | Sbjct 397863 TTAAAAATCTGCATCCAAAGTGAACACGTTGTCTGTTGTCTCTGTCATTACAGCAAAGCG 397922 Query 15946 TTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTC 16005 ||||| || ||| | ||| |||||||| || || |||||||| | ||||||||| || Sbjct 397923 CTGATACTCTGAAACCCGCTTCTCAAAGAAGTTGGTCTTTCCTTCCAGTGAAATATTCTC 397982 Query 16006 CATAAAATCAAAAGGATTTTTTG 16028 ||| ||||||||||| |||| || Sbjct 397983 CATGAAATCAAAAGGGTTTTCTG 398005 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 16505 ATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGA 16564 || ||||| |||||||| | ||| ||||| ||||| |||| |||||| || |||||| Sbjct 414958 ATGTAAGTGTCTATTAGCAGACTGTACATCTCTGAGTGAACATTCTCAATGAGAATCTGA 415017 Query 16565 AAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 |||||||| || || | |||||| | || |||||||| Sbjct 415018 AAACCATAGAAACAGCGAGCTTCTGGGATCTGTACTTC 415055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462458134696200