Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq116 250 2e-61 seq888 163 2e-35 >seq116 Length=3595629 Score = 250 bits (276), Expect = 2e-61 Identities = 676/1030 (66%), Gaps = 11/1030 (1%) Strand=Plus/Plus Query 107603 GCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTTCAA 107662 |||| |||| ||||| | || | ||||| ||| | || ||||| | | ||| | Sbjct 2217054 GCGGGCGCCGCTCACGCCCGCCGACTACCTGAACCTGACGGCGGACTGCGCGAGCTACCG 2217113 Query 107663 GGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGC 107722 |||| || ||| | ||| | | ||||| | || ||| | |||||| | || Sbjct 2217114 CGCCCGGCGGCGCTTCGTGCAGGTGGCGCTGAGCGAGGAGGAGGCGGCCTTCCCGCTCGC 2217173 Query 107723 CTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTA 107782 || ||| ||||| |||| || || | || || || || ||||||| ||| |||| Sbjct 2217174 CTTCTCCATGGTCATCCACGACCAGCTGGAGCTGTTCGAGCGCTTGCTGCGGGCCCTGTA 2217233 Query 107783 TGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGA 107842 || || |||||| | ||||| || |||||||| | ||| | || | | ||| | Sbjct 2217234 CGCGCCGCAGAACCTGTACTGCGTGCACGTGGACGCCAAGGCGCCCGCCGCCTTCCTGCA 2217293 Query 107843 GGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCC 107902 ||| || ||| | ||||||||||||| |||||| ||||||| | ||| | Sbjct 2217294 GGCCGTGCGCGCCCTGGCCGCCTGCTTCCCCAACGTCTTCGTGGCCAGCCGGCTGGAGCA 2217353 Query 107903 GGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCT 107962 || || || || |||||||| | |||| || ||||| ||||| ||||| ||| |||| Sbjct 2217354 CGTCGTCTACGCGTCCTGGTCGCGCCTGCAGGCCGACCTCAACTGCATGGAGGACCTGCT 2217413 Query 107963 CCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAA 108022 | | | | ||| ||| ||| | || || || ||||| || ||||||||| | || Sbjct 2217414 GCGCCGGCCCGAGCCCTGGCGCTACCTGCTCAACACCTGCGGCACCGACTTCCCCCTCAA 2217473 Query 108023 GACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTC 108082 |||||| |||||||| || | |||||| || || | || |||| |||||||| Sbjct 2217474 GACCAACGCCGAGATCGTGCGGGCCCTGCAGCTGCTCCGCGGCCGCAACAACATGGAGTC 2217533 Query 108083 TGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGA--- 108139 ||| || || | ||| | |||||| |||| | | ||| | || Sbjct 2217534 GGAGCGGCCCTCGGCCATCAAGCGCGAGCGCTGGCGCTACCAGCACCAAGTGTCTGAGAG 2217593 Query 108140 ---CACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCC--TGATAATTTACC-CAT 108193 ||| ||| | ||| | || ||| ||| || || || | | | ||| Sbjct 2217594 TGGCACCCTGGTGCGCACCGGGGTGACCAAGAGCCCCCCGCCGCTGGGCAGTGCCAACAT 2217653 Query 108194 GTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAA 108253 |||||| || || ||||| | |||| | || | ||| || | || ||| | || | Sbjct 2217654 GTTCACGGGTAACGCCTACATAGTGGTGACACGGGGCTTCGTGCGCCACGTCCTGGAGAG 2217713 Query 108254 CCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCT 108313 ||| | | || ||| | | |||| | | ||||| || ||||||||||| ||| | Sbjct 2217714 CCCCGAGGCGCAGCACCTGCTGGCCTGGGCCCAGGACACATACAGCCCCGACGAGCACGT 2217773 Query 108314 CTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTA 108373 |||||||| || ||||| || | |||| ||| | | || | || |||||| Sbjct 2217774 GTGGGCCACGCTGCAGCGCCTGCCAGGCGTGCCGGGCGCCTTGCCACCCAACGACAAGTA 2217833 Query 108374 TCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGA 108433 | | || ||||||| || | || | | ||||||||||| |||| ||||| || Sbjct 2217834 CGAGCTGTCTGACATGAACTCCCTGGCGCGCTTAGTCAAGTGGCACTACCTGGAGGGCGA 2217893 Query 108434 TGT-CAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCA 108492 | |||| |||||| || || | |||||| | || | || || | |||||||||| Sbjct 2217894 CATACAGC-GGGGGGCACCCTACCCGCCCTGCACCGGCACGCACCGCCGCGCCATCTGCA 2217952 Query 108493 TTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGT 108552 | ||||| ||||||||| |||||| |||||| | || ||||| |||| ||||||| Sbjct 2217953 TCTACGGCCTGGGGGACCTGCCCTGGATGCTCCAGCAGCAGCACCTGCTGGCCAACAAGT 2218012 Query 108553 TTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGG 108612 |||||| ||| ||||| || | | |||||||| | || ||| |||| || || ||| Sbjct 2218013 TTGACCTGAGTGTGGACGAGCAGGCGGTGCAGTGCCTGGAGGAGCACCTGCGCCACGAGG 2218072 Query 108613 CCATCTATGG 108622 | ||| ||| Sbjct 2218073 CGCTCTTTGG 2218082 Score = 154 bits (170), Expect = 1e-32 Identities = 281/408 (69%), Gaps = 5/408 (1%) Strand=Plus/Plus Query 107730 ATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCT 107789 |||||| |||| | || ||||| | ||||| ||||| ||| ||| |||||||||| Sbjct 2206627 ATGGTGATCCACAACAACATTGAGATGTTTGAGAGGCTGTTGCAGGCCCTGTATGCCCCG 2206686 Query 107790 CAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTC 107849 ||||| | | ||||||||| |||| ||| || | ||||| || | |||| || Sbjct 2206687 CAGAATCTCTGCTGTGTCCATACAGATGCCAAGCTCCTAAGGACTTCCAGA-AGGCAGTA 2206745 Query 107850 AAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTT 107909 | | || | ||||| |||||||||| ||| |||||| || || |||||| Sbjct 2206746 CATGGGATCGTATCCTGTTTCCCCAATGCCTTTG-GGCCAGCAAACTGAAGTGGGTGGTC 2206804 Query 107910 TATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGC 107969 ||||| |||||||| | | || || || | ||||| ||||||||| |||||||| Sbjct 2206805 TATGCATCCTGGTCAATGCTTCAGGCCAACATCAACTGCATGGAAGACCTGCTCCAGCAT 2206864 Query 107970 TCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAAT 108029 || | || || | | ||| ||||||||||| || || ||||| | | |||| |||| Sbjct 2206865 CCAATACCCCGGCAATTCTTCCTGAATACATGTGGCACTGACTTTGCACTCAAGATCAAT 2206924 Query 108030 GCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTA 108089 ||| |||| ||| ||||| ||| | |||| | || ||||| || || | || Sbjct 2206925 GCCAAGATCCTCCAAGCCCTGAAGCTTCTGAAAGTAAAAAACAGCCTGAAGCCAGAAAAG 2206984 Query 108090 CCTTCTGAGTCCaaaaa---aaaTCGCTGGAAATACCGCTATGAGGTG 108134 || || ||| |||| || |||||||||| | | ||||| ||| Sbjct 2206985 CCCTCAGAGGCCAAGAAGTTCCATCGCTGGAAGTTCGCTTATGAAGTG 2207032 >seq888 Length=819236 Score = 163 bits (180), Expect = 2e-35 Identities = 289/417 (69%), Gaps = 6/417 (1%) Strand=Plus/Plus Query 107722 CCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGT 107781 |||||| || ||| ||| | || ||||| | | || ||||| ||| |||| ||| Sbjct 298322 CCTACTTCATAGTGATCCGCAACAAAATTGAGATGTGAGAGAGGCTGTTGCCAGCCCTGT 298381 Query 107782 ATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAG 107841 || |||| ||||| | | |||| |||| | |||| ||| || | ||||| || | Sbjct 298382 ATACCCCACAGAAGCTCTGCTGTATCCATATAGATGCCAAGCTCCTAAGGACTTCCAGA- 298440 Query 107842 AGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCC 107901 |||| || | | || | | ||||||||||||||||| ||||||| ||| || Sbjct 298441 AGGCAGTACATGGGATCACATTGTGCTTCCCCAATGTCTTTCTGGCCAGCAAGCTGAAGT 298500 Query 107902 CGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGC 107961 |||||| ||||| || ||||| | | || || | | ||||| ||||||||||||| Sbjct 298501 GGGTGGTCTATGCATCATGGTCAATGCTTCAGGCCAAAATCAACTGCATGGAAGACTTGC 298560 Query 107962 TCCAG-AGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATA 108020 ||||| | || ||| || ||| | | | | ||||||||||| || || ||||| |||| Sbjct 298561 TCCAGCATCT-AGTTCCCTGGCAATTCCTCCTGAATACATGTGGCACTGACTTTGCCATC 298619 Query 108021 AAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAG 108080 ||| ||||||| |||| ||| ||||| ||| | |||| | | ||||| ||||| Sbjct 298620 AAGTTCAATGCCAAGATCCTCCAAGCCCTGAAGCTTCTGAAAGTGGAAAACAGCCTGGAG 298679 Query 108081 TCTGAGGTACCTTCTGAGTCCaaaaa---aaaTCGCTGGAAATACCGCTATGAGGTG 108134 | || || || ||| |||| || ||| |||||||| || ||||| ||| Sbjct 298680 CCAGAAAAGCCCTCAGAGGCCAAGAAGTTCCATCACTGGAAATTCCCTTATGAAGTG 298736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348229253751258