Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq178 129 5e-25 seq1356 82.4 7e-11 >seq178 Length=3009335 Score = 129 bits (142), Expect = 5e-25 Identities = 109/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || |||||||| || || ||||||||||| || | ||| ||||| ||||||| ||| || Sbjct 616906 TCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 616847 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | |||||| || | ||||| || ||||||||||| ||||| ||||| |||||||| ||| Sbjct 616846 AACCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGCT 616787 Query 11774 ACTACTCTTTCTCC 11787 ||||| | |||||| Sbjct 616786 ACTACACGTTCTCC 616773 >seq1356 Length=288588 Score = 82.4 bits (90), Expect = 7e-11 Identities = 97/128 (76%), Gaps = 4/128 (3%) Strand=Plus/Plus Query 142882 CAATGGATTTTTGGGAATATACTATGTAAAATA--ATGTCCGTATTATACTACGTAGGAT 142939 |||||||||||||| |||||| | ||||||||| |||| ||| | |||||| | || | Sbjct 163549 CAATGGATTTTTGGAAATATAATGTGTAAAATAGTATGT-GGTAGT-TACTACATTGGTT 163606 Query 142940 TCTTTAGTAATATGTTTATAATAACACTTATGAGTATAGATAGATATTTTGCGATCGTTC 142999 ||| ||| ||| || ||||||| | ||||| ||||| || || || | || |||| Sbjct 163607 TCTATAGCGGTATATTCTTAATAACTGTGATGAGCATAGACAGGTACTTGGGCATTGTTC 163666 Query 143000 ATCCTATA 143007 || ||||| Sbjct 163667 ATACTATA 163674 Score = 82.4 bits (90), Expect = 7e-11 Identities = 97/128 (76%), Gaps = 4/128 (3%) Strand=Plus/Minus Query 3448 TATAGGATGAACGATCGCAAAATATCTATCTATACTCATAAGTGTTATTATAAACATATT 3507 ||||| |||||| || | || || || ||||| ||||| | ||||||| || ||| Sbjct 163674 TATAGTATGAACAATGCCCAAGTACCTGTCTATGCTCATCACAGTTATTAAGAATATACC 163615 Query 3508 ACTAAAGAATCCTACGTAGTATAATACGGACAT--TATTTTACATAGTATATTCCCAAAA 3565 ||| |||| || | |||||| | ||| |||| ||||||||| | |||||| |||||| Sbjct 163614 GCTATAGAAACCAATGTAGTA-ACTACC-ACATACTATTTTACACATTATATTTCCAAAA 163557 Query 3566 ATCCATTG 3573 |||||||| Sbjct 163556 ATCCATTG 163549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468470234430480