Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq489 120 4e-22 seq209 107 3e-18 seq178 105 9e-18 seq718 86.0 8e-12 >seq489 Length=1618624 Score = 120 bits (132), Expect = 4e-22 Identities = 124/161 (77%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 36156 AACATGCGAAAT-CGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTG 36214 |||||| | ||| | | |||| |||| ||||| ||||| | || ||||| || || Sbjct 408004 AACATGTGTAATGCTCTATGTATTACCTCATCTCTGCTAATGAGCTCATTGGAGAAAGTC 408063 Query 36215 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAG 36274 ||||| ||||| | ||| | ||| || ||||||||||||| ||||| ||||| || ||| Sbjct 408064 AGTCCAGGCATCAAGCCTCTCTTCTTCAGCCAAAATATGGCAGCAAAAGATCCTGAGAAG 408123 Query 36275 AAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC 36315 || |||||||| ||||| |||||||||| | |||||| || Sbjct 408124 AAGATTCCTTCCACTGCAGCAAAGGCAACCACTCTCTCCCC 408164 >seq209 Length=2765169 Score = 107 bits (118), Expect = 3e-18 Identities = 92/114 (81%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 || ||||||| ||| |||||||||||||| || || |||||||||||||| || ||||| Sbjct 1491649 CCAGCTCCAAATTTGCTGAAATCTCTCTTGGACTGCAGAGTATATGCAGTTAGCCCAAGA 1491590 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAA 9593 ||||| |||||||| || || |||||||| | || | |||||||||||| Sbjct 1491589 AACACAGCAGTAGTAAGAATAAAAGCTTGTAGGACAATGGATACATCATAGAAA 1491536 Score = 100 bits (110), Expect = 4e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 9227 TTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATC 9286 ||| || ||||| || | |||| | | | ||| || | |||||||||||||||||| Sbjct 1494617 TTACTTTTTATTGAATGCCTCCAGTAAACGCAGCAGGTGTAGGAACAGATTGATGATATC 1494558 Query 9287 CAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGA 9346 ||| |||| ||||| || || | | || |||||||| || ||||| || || | | Sbjct 1494557 CAAATAGAGGTTGATTGAAGCCAGTATGTACTCTTCAGGGGACAGCTTGTGCATCACCAA 1494498 Query 9347 GTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAG 9406 || |||||||| | || ||||| ||||| | ||| || ||| ||| | | ||||| Sbjct 1494497 ATGAGTGTCATAAACGATAAATCCACAGAACAGAAGAGCTCCACCAGCTGCAAATACCAG 1494438 Query 9407 CTCCACTGTTTCACT 9421 |||| ||| ||||| Sbjct 1494437 TTCCATTGTCTCACT 1494423 >seq178 Length=3009335 Score = 105 bits (116), Expect = 9e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||||||| || | || || ||||| |||||||| ||||||| || | || | Sbjct 616908 CCTCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 616849 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | | |||||| ||||| ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 616848 TCAACCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 616789 Query 36300 C 36300 | Sbjct 616788 C 616788 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||||| | || || || || | ||||| |||||||| |||||||||||||| ||||| Sbjct 613726 ATCTTTTATGTAAGTGTCTATAAGCAGACTGTACATTTCTGAATGAATGTTTTCCATGGC 613667 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 || || || || || ||||| | ||| || || ||||| |||||| Sbjct 613666 AATCTGGAAGCCATAAAAACAGCGAGCTTCTGTGATCTGCACTTCT 613621 >seq718 Length=1082811 Score = 86.0 bits (94), Expect = 8e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||| ||||| || | |||| || ||||| || ||||||||||| || || | Sbjct 686352 ACCTGAAACTCTCCTGAGAGGACTCGGCGTGTGTAGATGTTACTGGTATAGGGCTCGATG 686411 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGG 65287 || |||||||| |||||||| ||||| || || ||||| ||||| || Sbjct 686412 GATTCATTATTGCCCAAAATCTGAGCCGTGGAAGCAGTTGGCATTGG 686458 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 66060 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGT 66119 || |||||||| ||||||||||||||||| || || | || | || || | || || Sbjct 694186 ACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCCCTAGCTCGCTGC 694245 Query 66120 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGT 66179 ||||| || || || ||||| || | |||||| ||| | | || || | |||||||| Sbjct 694246 TCCTCCTTCCCGGTGTTCTTCTTCAAATCGAGAAACTCAAAGATGTCCAAGTGCCACGGC 694305 Query 66180 TCCAAGTATATGGC 66193 |||| ||| ||||| Sbjct 694306 TCCAGGTAAATGGC 694319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658096147550280