Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq780 87.8 2e-12 seq5 87.8 2e-12 >seq780 Length=1004500 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 142969 ACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGA 143028 ||||| || | ||| | || ||||| || || |||||||| ||| || |||| Sbjct 815391 ACGCAGCACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCC 815450 Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088 ||||| || || || |||||| ||||||| | ||||| || || || ||||||||||| Sbjct 815451 ATCTTCTAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTT 815510 Query 143089 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148 ||| || || || | | || | ||||| |||| || || || | || | Sbjct 815511 GTCCTGGATCTTAGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGAT 815570 Query 143149 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||||||||||| || || ||||| || ||||| Sbjct 815571 GGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 815606 >seq5 Length=7401140 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| |||| || |||| || | || | || |||||||| || |||||||| || Sbjct 630489 GCCACCTCTCAAGCGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGA 630430 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| ||||| || || || |||||| |||| || | ||||| ||||| || Sbjct 630429 CAGGGTGCGGCCATCTTCCAGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGG 630370 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||||| || ||||| || || || | | || | ||||| |||| || || Sbjct 630369 AATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCAC 630310 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | ||||||||||||| || || ||||| || ||||| Sbjct 630309 CTCAAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 630262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506955351835440