Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq910 152 1e-31 seq5 141 2e-28 seq178 107 4e-18 seq319 87.8 4e-12 >seq910 Length=787505 Score = 152 bits (168), Expect = 1e-31 Identities = 131/162 (81%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || ||||||||||| ||| |||| |||||||| |||||| | || || | || |||||| Sbjct 100831 GCTTTATGGTGGTACTATGTCTCCAAAGGAATTGAATACTTGGACACAGTATTTTTCATC 100772 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 || || ||||||||||| ||||| ||||| || ||||| |||||||||| ||| ||||| Sbjct 100771 CTGCGGAAGAAATTTAACCAAATCAGTTTCCTTCATGTTTATCATCATTGTACCATGTTC 100712 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAA 78649 || ||| | ||||| || || || ||| | |||||||||||| Sbjct 100711 ACCTTGTGGTGGATTGGAATCAAGTGGGTTGCAGGAGGACAA 100670 >seq5 Length=7401140 Score = 141 bits (156), Expect = 2e-28 Identities = 171/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | | || || || || | || ||||||||||| || || |||||| Sbjct 630491 ATGCCACCTCTCAAGCGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCA 630432 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || ||||||||||| || |||||||| || || || Sbjct 630431 GACAGGGTGCGGCCATCTTCCAGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCGGGG 630372 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||| ||||| || || ||||| || | ||| || || || || Sbjct 630371 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCC 630312 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| || || || ||||| || || || || || || || |||||||| || Sbjct 630311 ACCTCAAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATGTT 630259 Score = 136 bits (150), Expect = 9e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | | || || || || | ||||| || ||||||||||| ||||| Sbjct 630719 ATGCCACCTCTCAAGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGAATATTGTAGTCG 630660 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || |||||||| ||||| |||||||| || |||||||| || || || Sbjct 630659 GACAGGGTGCGGCCATCTTCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGGG 630600 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||| | ||||| ||||| || || || || || | ||| || | || || Sbjct 630599 GGAATGCCTTCTGTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACGGGGCTCC 630540 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| ||||| | ||||| || || || | || || || |||||||| Sbjct 630539 ACCTCGAGTGTGACGGTCTTGCCGGTTAGGGGCTTCACGAAGATCTGCAT 630490 Score = 136 bits (150), Expect = 9e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | | || || || || | ||||| || ||||||||||| ||||| Sbjct 630947 ATGCCACCTCTCAAGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGAATATTGTAGTCG 630888 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || |||||||| ||||| |||||||| || |||||||| || || || Sbjct 630887 GACAGGGTGCGGCCATCTTCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGGG 630828 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||| | ||||| ||||| || || || || || | ||| || | || || Sbjct 630827 GGAATGCCTTCTGTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACGGGGCTCC 630768 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| ||||| | ||||| || || || | || || || |||||||| Sbjct 630767 ACCTCGAGTGTGACGGTCTTGCCGGTTAGGGGCTTCACGAAGATCTGCAT 630718 Score = 136 bits (150), Expect = 9e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | | || || || || | ||||| || ||||||||||| ||||| Sbjct 631175 ATGCCACCTCTCAAGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGAATATTGTAGTCG 631116 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || |||||||| ||||| |||||||| || |||||||| || || || Sbjct 631115 GACAGGGTGCGGCCATCTTCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGGG 631056 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||| | ||||| ||||| || || || || || | ||| || | || || Sbjct 631055 GGAATGCCTTCTGTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACGGGGCTCC 630996 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| ||||| | ||||| || || || | || || || |||||||| Sbjct 630995 ACCTCGAGTGTGACGGTCTTGCCGGTTAGGGGCTTCACGAAGATCTGCAT 630946 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||||||||| ||||| || || || | || |||||||| ||||| ||| Sbjct 631370 GTAGACTCCTTCTGAATATTGTAGTCGGACAGGGTGCGGCCATCTTCTAGCTGTTTCCCA 631311 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| || || || || || |||||| | ||||| ||||| || || Sbjct 631310 GCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTGTGTCCTGGATCTTGGCCTTC 631251 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || | || || ||||| ||||| | ||||| || || || | Sbjct 631250 ACGTTCTCGATGGTGTCACGGGGCTCCACCTCGAGTGTGACGGTCTTGCCGGTTAGGGGC 631191 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 631190 TTCACGAAGATCTGCAT 631174 >seq178 Length=3009335 Score = 107 bits (118), Expect = 4e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 |||||| | |||| |||||||| || || ||||| || |||||||| || |||||||| Sbjct 616773 GGAGAACGTGTAGTAGCTTTTGCAGCAGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCA 616832 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 | || |||||||||||||||||||| | ||||| ||| | ||||| ||||| || | Sbjct 616833 TCCATTTTTTGGTTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAATGAGCTC 616892 Query 269246 ATAAGCAGGGACGA 269259 || || || || || Sbjct 616893 ATCAGTAGAGATGA 616906 Score = 96.9 bits (106), Expect = 8e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 268916 CAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAAT 268975 ||||| || ||||| | ||||| | |||||||| || |||||||| || || ||||| Sbjct 613619 CAAGAAGTGCAGATCACAGAAGCTCGCTGTTTTTATGGCTTCCAGATTGCCATGGAAAAC 613678 Query 268976 ATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGAT 269023 ||||||||||| ||||||||||| | ||||| ||||| ||| | ||| Sbjct 613679 ATTCATTCAGAAATGTACAGTCTGCTTATAGACACTTACATAAAAGAT 613726 >seq319 Length=2223312 Score = 87.8 bits (96), Expect = 4e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 78491 TTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTA 78550 || |||||||||||| | ||||||| ||| |||| | | || ||||| ||||| | ||| Sbjct 169921 TTGTGGTGGTATTATTTTTCTAAAGTAATTGAATTCATGGACACTATTTTCTTTGTACTA 169862 Query 78551 CGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTA 78608 || ||||| | |||||| | || || ||||||||||||||| || ||||||| Sbjct 169861 CGGAAGAAGAACAGTCAAATCACCTTCCTTCATGTATATCATCATGCCACCATGTTTA 169804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151260952895436