Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq448 93.3 3e-14 >seq448 Length=1749325 Score = 93.3 bits (102), Expect = 3e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 25772 TCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGT 25831 |||| || | || || ||||| |||| ||||| ||||| || || || ||||||| | Sbjct 715755 TCATATCTTTATATTCCGCTCCAAAATGTCTCCATTGGAAACCATAAACAGGTCCTAAAT 715814 Query 25832 CTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGT 25891 | || || ||||| || || |||||||| || || | || |||||||| | Sbjct 715815 CCCCTTCCATTCTGTGGGTGAAACCTTGTTTATCCAAGAACTCGCGTGATCCATTGGCAT 715874 Query 25892 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 |||| ||||| || ||||| |||||||||||||| | ||||| || || Sbjct 715875 CCCAAATCTTGACTCCCTTTTCGGAGAGCTCTTTAGCATTTGTAGAGCC 715923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340098977056641