Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29]
9,317 sequences; 2,270,567,745 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq41 141 1e-28
seq259 140 5e-28
>seq41
Length=4869164
Score = 141 bits (156), Expect = 1e-28
Identities = 137/176 (78%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 8765 CCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8824
||||||||||||||||| |||||||| | |||||||||||| |||| ||| || ||
Sbjct 2063224 CCGCCGAAGGTGCTGGGCTTCCAGTACACGGGGGAGCAGATGGGGTTCCCCAGCAGCCCC 2063165
Query 8825 TTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8884
|||||||| || || ||||| | ||| | |||||||| || ||||||||||||| |
Sbjct 2063164 TTGAGGGAGAAGGGGGCCCCGATCTCCACCATGCTCTCCCCAAAGATGGCGTTGGCTTGC 2063105
Query 8885 GGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAG 8940
||||| |||| || | || | ||| ||||||| || |||||||| ||||| ||
Sbjct 2063104 GGCTTCTCCAGCAGCAGCCCCGGGTAGAACTCCAGGGCGTCGATGTCGCCGTACAG 2063049
Score = 89.7 bits (98), Expect = 7e-13
Identities = 118/164 (72%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669
|| ||||| | |||||| || | ||||| || || || ||||| | ||| || ||
Sbjct 2061579 TCACCGATGAGGATGAGCCGGGCCGTCTGGAAGAGCTGCTCGTCGCCCCACGTCGGGTGC 2061520
Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729
|| | ||||| || || || || | |||||| || | |||||||| || |||||||||
Sbjct 2061519 TCCTGCTTCAGCACGTCACAGACGCGGTTGTGCTCGCGGAGCCAGAGGGTCGCGTACATC 2061460
Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAG 9773
|| || || |||| || ||||| |||| || || || |||||
Sbjct 2061459 ATCAGCCCGGGCAGGAGCCCAAACACCTCCTGGCCCACGGCCAG 2061416
>seq259
Length=2521796
Score = 140 bits (154), Expect = 5e-28
Identities = 202/285 (71%), Gaps = 0/285 (0%)
Strand=Plus/Minus
Query 8690 AACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATC 8749
|| ||||| || || |||||| | |||| || || | | || | ||||| ||
Sbjct 1698335 AAGGGACAACCCTTTACGTTGTTGCAGATGAGTTTTTGCAGGGAGGCCGTGTTGACTATT 1698276
Query 8750 CCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACG 8809
|||| || || ||| || || ||||| || |||||||| | || |||||||| |
Sbjct 1698275 TCAAAGCCTACTCTTCCACCAAAAGTGCTAGGCTTCCAGTACTCAGGAGAGCAGATAGCA 1698216
Query 8810 TTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAG 8869
|| |||| |||||||| | || || || || || ||||| | || ||||||| |||
Sbjct 1698215 TTTCCCATCAGGCCTTTCAACGAGAATGGTGCTCCAAGCTCTACCATAGTCTCACCAAAG 1698156
Query 8870 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATG 8929
||||| |||||||||||||| || || | || | |||| ||||| ||| || |||
Sbjct 1698155 ATGGCTCCTGGACGGGGCTTTTCTACTAACAGACCAGGATACAGCTCCATAGCATCAATG 1698096
Query 8930 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974
||||| ||||| | |||||||| || ||||| |||||||||
Sbjct 1698095 TCTCCATAAAGCTCTTCCAGTTCGGCTGCCATTTCTTTTTCTCCT 1698051
Score = 114 bits (126), Expect = 2e-20
Identities = 170/241 (71%), Gaps = 0/241 (0%)
Strand=Plus/Minus
Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681
||||||| || || || || | |||| ||| |||||||||||| || | || ||
Sbjct 1695907 ATGAGTCTGGTAGTTTGGAATAACCGTTCATCATCCCATTCTGGATGCTCCTGCTTAAGG 1695848
Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741
| || || || | |||||| ||||||||||| || ||||| |||||||| | ||| ||
Sbjct 1695847 ATGTCACAGACCCGGTTGTGCTCCCTGAGCCATATGGTAGCATACATCATTAAACCTGGG 1695788
Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801
||||||||||| |||| || || |||| | | | || || || || | ||||||
Sbjct 1695787 ACCAGGCCAAACACCTCCTGTCCTACAGAGAATTGTAGATGCTCAGGAACATGAGGAGGA 1695728
Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861
|| ||||| | | || ||| || || | || || |||||||| || |||| |||
Sbjct 1695727 TACATCATTTCTGCTTGAGTATCCTTCACTGTTGGAGGGTACATTTCTCCACCAATCATC 1695668
Query 9862 T 9862
|
Sbjct 1695667 T 1695667
Score = 89.7 bits (98), Expect = 7e-13
Identities = 133/189 (70%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 10088
||||||||||| || || ||||| |||||||| || ||| ||||||| ||||
Sbjct 1694795 CTTACCCCATGCCCAAGGCCTTTTGTGAAGGCTGGTCCTTTGTGGTGATCAGTCTTAAAG 1694736
Query 10089 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 10148
|||||||| ||||| ||||| |||| || | ||||| | || |||| ||| |||||
Sbjct 1694735 AACTGGTGGGTGAAGTGTTGAGCAAAGAATGTGAACATAATATTTGTGCTCTGTGGATCT 1694676
Query 10149 GGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAttt 10208
||| | || | ||| || ||| || |||||||| | |||||| || |
Sbjct 1694675 GGAATAAATTTTTTCCTCAGCAGAAACTTCTCCACAACTAACTTGGAATCCGGGAGTTCC 1694616
Query 10209 tttttACCT 10217
|||||||||
Sbjct 1694615 TTTTTACCT 1694607
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 708442283430480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |