Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq41 141 1e-28 seq259 140 5e-28 >seq41 Length=4869164 Score = 141 bits (156), Expect = 1e-28 Identities = 137/176 (78%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 8765 CCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8824 ||||||||||||||||| |||||||| | |||||||||||| |||| ||| || || Sbjct 2063224 CCGCCGAAGGTGCTGGGCTTCCAGTACACGGGGGAGCAGATGGGGTTCCCCAGCAGCCCC 2063165 Query 8825 TTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8884 |||||||| || || ||||| | ||| | |||||||| || ||||||||||||| | Sbjct 2063164 TTGAGGGAGAAGGGGGCCCCGATCTCCACCATGCTCTCCCCAAAGATGGCGTTGGCTTGC 2063105 Query 8885 GGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAG 8940 ||||| |||| || | || | ||| ||||||| || |||||||| ||||| || Sbjct 2063104 GGCTTCTCCAGCAGCAGCCCCGGGTAGAACTCCAGGGCGTCGATGTCGCCGTACAG 2063049 Score = 89.7 bits (98), Expect = 7e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || ||||| | |||||| || | ||||| || || || ||||| | ||| || || Sbjct 2061579 TCACCGATGAGGATGAGCCGGGCCGTCTGGAAGAGCTGCTCGTCGCCCCACGTCGGGTGC 2061520 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 || | ||||| || || || || | |||||| || | |||||||| || ||||||||| Sbjct 2061519 TCCTGCTTCAGCACGTCACAGACGCGGTTGTGCTCGCGGAGCCAGAGGGTCGCGTACATC 2061460 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAG 9773 || || || |||| || ||||| |||| || || || ||||| Sbjct 2061459 ATCAGCCCGGGCAGGAGCCCAAACACCTCCTGGCCCACGGCCAG 2061416 >seq259 Length=2521796 Score = 140 bits (154), Expect = 5e-28 Identities = 202/285 (71%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 8690 AACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATC 8749 || ||||| || || |||||| | |||| || || | | || | ||||| || Sbjct 1698335 AAGGGACAACCCTTTACGTTGTTGCAGATGAGTTTTTGCAGGGAGGCCGTGTTGACTATT 1698276 Query 8750 CCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACG 8809 |||| || || ||| || || ||||| || |||||||| | || |||||||| | Sbjct 1698275 TCAAAGCCTACTCTTCCACCAAAAGTGCTAGGCTTCCAGTACTCAGGAGAGCAGATAGCA 1698216 Query 8810 TTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAG 8869 || |||| |||||||| | || || || || || ||||| | || ||||||| ||| Sbjct 1698215 TTTCCCATCAGGCCTTTCAACGAGAATGGTGCTCCAAGCTCTACCATAGTCTCACCAAAG 1698156 Query 8870 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATG 8929 ||||| |||||||||||||| || || | || | |||| ||||| ||| || ||| Sbjct 1698155 ATGGCTCCTGGACGGGGCTTTTCTACTAACAGACCAGGATACAGCTCCATAGCATCAATG 1698096 Query 8930 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 ||||| ||||| | |||||||| || ||||| ||||||||| Sbjct 1698095 TCTCCATAAAGCTCTTCCAGTTCGGCTGCCATTTCTTTTTCTCCT 1698051 Score = 114 bits (126), Expect = 2e-20 Identities = 170/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||||| || || || || | |||| ||| |||||||||||| || | || || Sbjct 1695907 ATGAGTCTGGTAGTTTGGAATAACCGTTCATCATCCCATTCTGGATGCTCCTGCTTAAGG 1695848 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | || || || | |||||| ||||||||||| || ||||| |||||||| | ||| || Sbjct 1695847 ATGTCACAGACCCGGTTGTGCTCCCTGAGCCATATGGTAGCATACATCATTAAACCTGGG 1695788 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 ||||||||||| |||| || || |||| | | | || || || || | |||||| Sbjct 1695787 ACCAGGCCAAACACCTCCTGTCCTACAGAGAATTGTAGATGCTCAGGAACATGAGGAGGA 1695728 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 || ||||| | | || ||| || || | || || |||||||| || |||| ||| Sbjct 1695727 TACATCATTTCTGCTTGAGTATCCTTCACTGTTGGAGGGTACATTTCTCCACCAATCATC 1695668 Query 9862 T 9862 | Sbjct 1695667 T 1695667 Score = 89.7 bits (98), Expect = 7e-13 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 10088 ||||||||||| || || ||||| |||||||| || ||| ||||||| |||| Sbjct 1694795 CTTACCCCATGCCCAAGGCCTTTTGTGAAGGCTGGTCCTTTGTGGTGATCAGTCTTAAAG 1694736 Query 10089 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 10148 |||||||| ||||| ||||| |||| || | ||||| | || |||| ||| ||||| Sbjct 1694735 AACTGGTGGGTGAAGTGTTGAGCAAAGAATGTGAACATAATATTTGTGCTCTGTGGATCT 1694676 Query 10149 GGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAttt 10208 ||| | || | ||| || ||| || |||||||| | |||||| || | Sbjct 1694675 GGAATAAATTTTTTCCTCAGCAGAAACTTCTCCACAACTAACTTGGAATCCGGGAGTTCC 1694616 Query 10209 tttttACCT 10217 ||||||||| Sbjct 1694615 TTTTTACCT 1694607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708442283430480