Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq5 123 2e-23 seq780 122 8e-23 >seq5 Length=7401140 Score = 123 bits (136), Expect = 2e-23 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||||||| |||| ||||| ||||| || ||||| || || | ||| || || | Sbjct 630488 CCACCTCTCAAGCGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 630429 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| |||||||| ||||| ||||||| | || ||||| || || ||| Sbjct 630428 AGGGTGCGGCCATCTTCCAGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 630369 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || ||||| || | | |||||| | | || || Sbjct 630368 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACC 630309 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTAC 95013 |||| |||||||| || || || || || ||||| |||||||||||| |||| Sbjct 630308 TCAAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATGTTTAC 630256 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||||||| |||| ||||| ||||| ||||| ||||| || | || || ||| | Sbjct 630716 CCACCTCTCAAGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGAATATTGTAGTCGGAC 630657 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| || |||||||| || ||||||| | || ||||| || || ||| Sbjct 630656 AGGGTGCGGCCATCTTCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 630597 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || |||||| |||| | || || ||||| ||| ||| |||||| | | || || Sbjct 630596 ATGCCTTCTGTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACGGGGCTCCACC 630537 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||| ||| || || || || | ||||| ||||||||||||| Sbjct 630536 TCGAGTGTGACGGTCTTGCCGGTTAGGGGCTTCACGAAGATCTGCATGC 630488 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||||||| |||| ||||| ||||| ||||| ||||| || | || || ||| | Sbjct 630944 CCACCTCTCAAGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGAATATTGTAGTCGGAC 630885 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| || |||||||| || ||||||| | || ||||| || || ||| Sbjct 630884 AGGGTGCGGCCATCTTCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 630825 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || |||||| |||| | || || ||||| ||| ||| |||||| | | || || Sbjct 630824 ATGCCTTCTGTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACGGGGCTCCACC 630765 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||| ||| || || || || | ||||| ||||||||||||| Sbjct 630764 TCGAGTGTGACGGTCTTGCCGGTTAGGGGCTTCACGAAGATCTGCATGC 630716 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||||||| |||| ||||| ||||| ||||| ||||| || | || || ||| | Sbjct 631172 CCACCTCTCAAGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGAATATTGTAGTCGGAC 631113 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| || |||||||| || ||||||| | || ||||| || || ||| Sbjct 631112 AGGGTGCGGCCATCTTCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 631053 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || |||||| |||| | || || ||||| ||| ||| |||||| | | || || Sbjct 631052 ATGCCTTCTGTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACGGGGCTCCACC 630993 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||| ||| || || || || | ||||| ||||||||||||| Sbjct 630992 TCGAGTGTGACGGTCTTGCCGGTTAGGGGCTTCACGAAGATCTGCATGC 630944 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| |||| ||||| ||||| ||||| ||||| || | || || ||| | Sbjct 631400 CCACCCCTCAGGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGAATATTGTAGTCGGAC 631341 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| || |||||||| || ||||||| | || ||||| || || ||| Sbjct 631340 AGGGTGCGGCCATCTTCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 631281 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || |||||| |||| | || || ||||| ||| ||| |||||| | | || || Sbjct 631280 ATGCCTTCTGTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACGGGGCTCCACC 631221 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||| ||| || || || || | ||||| ||||||||||||| Sbjct 631220 TCGAGTGTGACGGTCTTGCCGGTTAGGGGCTTCACGAAGATCTGCATGC 631172 >seq780 Length=1004500 Score = 122 bits (134), Expect = 8e-23 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| |||| || |||||||| || | ||| || ||| || ||| | | Sbjct 815164 CGCAGCACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 815223 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || ||||| || ||| ||||||| | || ||||| || || ||||| ||||||||| Sbjct 815224 TCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTG 815283 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| || | | |||||| | | || || || | |||||| Sbjct 815284 TCCTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATG 815343 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || ||||| || || ||||||||||||||||||| Sbjct 815344 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGC 815380 Score = 116 bits (128), Expect = 3e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| |||| || |||||||| || | ||| || ||| || ||| | | Sbjct 815392 CGCAGCACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 815451 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || ||||| || || ||||||| | || ||||| || || ||||| ||||||||| Sbjct 815452 TCTTCTAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTG 815511 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| ||| | | |||||| | | || || || | |||||| Sbjct 815512 TCCTGGATCTTAGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATG 815571 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || ||||| ||||| ||||||||||||| Sbjct 815572 GTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCATGC 815608 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| ||||| || |||||||| || | ||| || || || ||| | | Sbjct 815620 CGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA 815679 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || ||||| || ||| ||||||| | || ||||| || || ||||| ||||||||| Sbjct 815680 TCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTG 815739 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| || | | |||||| | | || || || | |||||| Sbjct 815740 TCCTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATG 815799 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || || || || ||||| |||||||||||| Sbjct 815800 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 815835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448238990886120