Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq270 129 9e-26 seq4 123 4e-24 seq472 116 6e-22 seq186 95.1 2e-15 >seq270 Length=2473950 Score = 129 bits (142), Expect = 9e-26 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||||||||||| || ||||| ||||| || |||||||| |||||||| || || Sbjct 1532087 CTGCGGGATAACATCCAGGGCATCACTAAGCCGGCCATCCGTCGCCTGGCTCGGCGCGGC 1532028 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | |||| || |||| || | || | ||| ||||| Sbjct 1532027 GGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGACCCGCGGGGTGCTCAAGGTCTTC 1531968 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || || ||| || |||||||| || || ||||| ||| Sbjct 1531967 CTAGAGAACGTGATCCGCGACGCCGTCACCTACACGGAGCACGCCAAGCGCAAGACCGTC 1531908 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || ||||||| | ||||| || | || || || ||||| Sbjct 1531907 ACTGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGCCG 1531867 Score = 129 bits (142), Expect = 9e-26 Identities = 172/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||||||||||| || || |||||||| || |||||||| |||||||| || || Sbjct 1534519 CTGCGGGATAACATCCAGGGCATTACCAAGCCGGCCATCCGTCGCCTGGCTCGGCGCGGC 1534460 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | | || || |||| |||| || | ||| | || Sbjct 1534459 GGCGTGAAGCGCATCTCCGGCCTCATTTACGAGGAGACCCGTGGGGTGCTCAAGGTTTTT 1534400 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| ||| || || ||| || |||||||| || || ||||| ||| Sbjct 1534399 CTAGAGAACGTGATCCGTGACGCCGTCACCTACACGGAGCACGCCAAGCGCAAGACCGTC 1534340 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| ||||||| | ||||| || | || || || ||||| | | | || || || || Sbjct 1534339 ACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGCCGCACGCTCTACGGCTTCGG 1534281 Score = 129 bits (142), Expect = 9e-26 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| || |||||||| || || Sbjct 1625913 CTGCGGGACAACATCCAGGGCATCACCAAGCCGGCCATCCGCCGCCTGGCTCGGCGCGGC 1625854 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | ||||||| |||| ||| | | | ||| ||||| Sbjct 1625853 GGCGTGAAGCGCATCTCCGGCCTCATCTATGAGGAGACTCGCGGGGGGCTCAAGGTCTTC 1625794 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| || | || || || ||| || |||||||| || || ||||| ||| Sbjct 1625793 CTGGAGAACGTGATTCGCGACGCCGTCACCTACACGGAGCACGCCAAGCGCAAGACCGTC 1625734 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| | ||||| || | || || || ||||| Sbjct 1625733 ACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGCCG 1625693 Score = 123 bits (136), Expect = 4e-24 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||||||||||| || || |||||||| ||||||||||| |||||||| || || Sbjct 1528641 CTGCGGGATAACATCCAGGGCATTACCAAGCCGGCTATCCGTCGCCTGGCTCGGCGCGGC 1528700 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | | || || |||| |||| || | ||| | || Sbjct 1528701 GGCGTGAAGCGCATCTCCGGCCTCATTTACGAGGAGACCCGTGGGGTGCTCAAGGTTTTT 1528760 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| ||| || || ||| || |||||||| || || ||||| ||| Sbjct 1528761 CTAGAGAACGTGATCCGTGACGCCGTCACCTACACGGAGCACGCCAAGCGCAAGACCGTC 1528820 Query 16634 ACCTCCATGGA 16644 ||| ||||||| Sbjct 1528821 ACCGCCATGGA 1528831 Score = 120 bits (132), Expect = 5e-23 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| || |||||||| || || Sbjct 1623701 CTGCGGGACAACATCCAGGGCATCACCAAGCCGGCCATCCGCCGCCTGGCTCGGCGCGGC 1623760 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | |||| || | || || | || | ||| ||||| Sbjct 1623761 GGCGTGAAGCGCATCTCCGGCCTCCTCTACGAGGCGACCCGCGGGGTGCTCAAGGTCTTC 1623820 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || | | ||| |||| || || || ||| || |||||||| || || ||||| ||| Sbjct 1623821 CTGGAAAACGTGATCCGCGACGCCGTCACCTACACGGAGCACGCCAAGCGCAAGACCGTC 1623880 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| | ||||| || | || || || ||||| Sbjct 1623881 ACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGCCG 1623921 >seq4 Length=7559895 Score = 123 bits (136), Expect = 4e-24 Identities = 173/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | || || ||||||||||| || ||||||||||| || || Sbjct 2357820 CGCCAAGCGGCACCGCAAAGTGCTGCGCGATAACATCCAGGGCATCACCAAGCCGGCCAT 2357761 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || || ||||| |||| || | |||| || |||| Sbjct 2357760 CCGCCGCCTGGCCCGCCGCGGGGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 2357701 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 2357700 CCGCGGGGTGCTGAAGGTTTTCCTGGAGAACGTCATCCGCGACGCCGTCACCTACACGGA 2357641 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| ||||||| | || || || |||| || || || Sbjct 2357640 GCACGCCAAGAGGAAGACCGTGACCGCCATGGACGTGGTGTACGCCCTGAAGCGCCAGGG 2357581 Query 16672 CCG 16674 || Sbjct 2357580 TCG 2357578 Score = 123 bits (136), Expect = 4e-24 Identities = 173/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | || || ||||||||||| || ||||||||||| || || Sbjct 2388199 CGCCAAGCGGCACCGCAAAGTGCTGCGCGATAACATCCAGGGCATCACCAAGCCGGCCAT 2388258 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || || ||||| |||| || | |||| || |||| Sbjct 2388259 CCGCCGCCTGGCCCGCCGCGGGGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 2388318 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 2388319 CCGCGGGGTGCTGAAGGTTTTCCTGGAGAACGTCATCCGCGACGCCGTCACCTACACGGA 2388378 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| ||||||| | || || || |||| || || || Sbjct 2388379 GCACGCCAAGAGGAAGACCGTGACCGCCATGGACGTGGTGTACGCCCTGAAGCGCCAGGG 2388438 Query 16672 CCG 16674 || Sbjct 2388439 TCG 2388441 Score = 114 bits (126), Expect = 2e-21 Identities = 171/243 (70%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || ||| | || || ||||||||||| || ||||||||||| || || Sbjct 2320896 CGCCAAGCGGCACCGCGAAGTGCTGCGCGATAACATCCAGGGCATCACCAAGCCGGCCAT 2320837 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || || ||||| |||| || | |||| || |||| Sbjct 2320836 CCGCCGCCTGGCCCGCCGCGGGGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 2320777 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 2320776 CCGCGGGGTGCTGAAGGTTTTCCTGGAGAACGTCATCCGCGACGCCGTCACCTACACGGA 2320717 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| | | |||| || ||| ||||||| | || || || |||| || || || Sbjct 2320716 GCACGCCAGGAGGTAGACCGTGACCGCCATGGACGTGGTGTACGCTCTGAAGCGCCAGGG 2320657 Query 16672 CCG 16674 ||| Sbjct 2320656 CCG 2320654 >seq472 Length=1676418 Score = 116 bits (128), Expect = 6e-22 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || |||||||| | |||||||||| || ||||| || ||||||| | ||||||||| Sbjct 445025 GACAACATCCAGAGCATCACCAAGCTGGCCATCCGCCGCCTGGCTCAGCATGGTGGAGTG 444966 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||| ||||||| | ||| |||||| | | || ||||| | ||||| ||| Sbjct 444965 AAGCTCATCTCTGGCTCCATCTTCCAAGAGACCCAGGGGGTGCTGAAGGTTTTCCTGAAG 444906 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| |||| ||||| | || ||| ||||| || || | |||||||||||| || Sbjct 444905 AACGTGATCCGTGATGTTGTCACCTACGTGGAGCATGCCAAGTGCAAGACTGTCACCACC 444846 Query 16640 ATGGATATCGTCTATGC 16656 |||||| | |||||||| Sbjct 444845 ATGGATGTGGTCTATGC 444829 >seq186 Length=2948809 Score = 95.1 bits (104), Expect = 2e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || |||||||||||||| ||| ||| ||| | ||| | | |||||||| | ||| Sbjct 2518009 TCTCCGTGATAACATCCAAGGCTTCATCAACCCATCCATCTGCCACCTGGCTCGCCATGG 2518068 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 | | |||| |||| | | ||||| | |||| | || || ||||| ||| Sbjct 2518069 CAGCATGAAGCACATCTCCAGCCTCATCTATAAGGAGACACACGAGGTGCTGAAGGGCTT 2518128 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 || ||| | | |||| ||| | || ||| |||||||| || || || |||||||| Sbjct 2518129 TCTGGAGAACATGATCCGTGACACCGTCACCTACACCGAGCATGCCAAGCGCAAGACTGT 2518188 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAA 16662 ||| |||||||| | ||||| || ||||| Sbjct 2518189 GACCCCCATGGATGTGGTCTACGCGTTGAA 2518218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79066681401681