Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq489 132 6e-26 seq178 111 2e-19 seq718 89.7 6e-13 >seq489 Length=1618624 Score = 132 bits (146), Expect = 6e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| ||||| || || ||||| || || ||||| ||||| | ||| | ||| | Sbjct 408029 CCTCATCTCTGCTAATGAGCTCATTGGAGAAAGTCAGTCCAGGCATCAAGCCTCTCTTCT 408088 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||||||||||| ||| || ||||| || |||||||||||||| ||||||||||||| Sbjct 408089 TCAGCCAAAATATGGCAGCAAAAGATCCTGAGAAGAAGATTCCTTCCACTGCAGCAAAGG 408148 Query 33446 CAATAAGTCTCTCTCC 33461 ||| | |||||| || Sbjct 408149 CAACCACTCTCTCCCC 408164 >seq178 Length=3009335 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| |||||||| || || || || ||||| |||||||| ||||||| || | || | Sbjct 616908 CCTCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 616849 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | | |||||| ||||| || || || |||||||||||||||||||| ||||| ||||| | Sbjct 616848 TCAACCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 616789 Query 33446 C 33446 | Sbjct 616788 C 616788 Score = 95.1 bits (104), Expect = 2e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623 |||||| | ||||| || || | ||||| |||||||| |||||||||||||| ||||| Sbjct 613726 ATCTTTTATGTAAGTGTCTATAAGCAGACTGTACATTTCTGAATGAATGTTTTCCATGGC 613667 Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683 ||||| || || || ||||| | ||| || || ||||| |||||| | ||| || || Sbjct 613666 AATCTGGAAGCCATAAAAACAGCGAGCTTCTGTGATCTGCACTTCTTGGCTAAAACGCTC 613607 Query 33684 CGCCAAA 33690 | || || Sbjct 613606 CACCTAA 613600 >seq718 Length=1082811 Score = 89.7 bits (98), Expect = 6e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 63216 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63275 || |||||||| ||||||||||||||||| || || | || || || || | || || Sbjct 694186 ACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCCCTAGCTCGCTGC 694245 Query 63276 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63335 ||||| || || || ||||| || | |||||| ||| | | || || | |||||||| Sbjct 694246 TCCTCCTTCCCGGTGTTCTTCTTCAAATCGAGAAACTCAAAGATGTCCAAGTGCCACGGC 694305 Query 63336 TCCAAGTATATGGC 63349 |||| ||| ||||| Sbjct 694306 TCCAGGTAAATGGC 694319 Score = 86.0 bits (94), Expect = 8e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||| ||||| || | |||| || ||||| || ||||||||||| || || | Sbjct 686352 ACCTGAAACTCTCCTGAGAGGACTCGGCGTGTGTAGATGTTACTGGTATAGGGCTCGATG 686411 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGG 62443 || |||||||| |||||||| ||||| || || ||||| ||||| || Sbjct 686412 GATTCATTATTGCCCAAAATCTGAGCCGTGGAAGCAGTTGGCATTGG 686458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622874650011720