Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq780 131 2e-25 >seq780 Length=1004500 Score = 131 bits (144), Expect = 2e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 ||||||||| | ||| | ||| || ||||| || |||||||| ||| || |||||| Sbjct 815391 ACGCAGCACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCC 815450 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 || |||||||||||||| || |||| | | ||||||||| || || || |||||||| Sbjct 815451 ATCTTCTAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTT 815510 Query 131139 GTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 ||| ||| || ||| | | ||| | || || ||| ||| | |||| ||| | Sbjct 815511 GTCCTGGATCTTAGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGAT 815570 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 ||| || ||||| ||||| || ||||| ||||||||| Sbjct 815571 GGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCATG 815607 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | | ||||||||| | ||| | ||| || ||||| || |||||||| ||| | Sbjct 815152 CCACCCCTGAGACGCAGCACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 815211 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || |||||||||||||| || |||| | | ||||||||| || || Sbjct 815212 AGGGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 815271 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| ||| || ||| | | ||| | || || ||| ||| | Sbjct 815272 ATGCCTTCTTTGTCCTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 815331 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| ||| | ||| || || || || || || || || ||||||||| Sbjct 815332 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 815379 Score = 116 bits (128), Expect = 3e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 ||||||||| | || | ||| || ||||| || |||||||| || || |||||| Sbjct 815619 ACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCC 815678 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 || |||||||||||||| || |||| | | ||||||||| || || || |||||||| Sbjct 815679 ATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTT 815738 Query 131139 GTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 ||| ||| || ||| | | ||| | || || ||| ||| | |||| ||| | Sbjct 815739 GTCCTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGAT 815798 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 ||| || ||||| || || || ||||| ||||||||| Sbjct 815799 GGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 815835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471957828209280