Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq489 120 4e-22 seq178 105 8e-18 seq718 89.7 7e-13 >seq489 Length=1618624 Score = 120 bits (132), Expect = 4e-22 Identities = 124/161 (77%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 32659 AACATGCGAAAT-CGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTG 32717 |||||| | ||| | | |||| |||| ||||| ||||| | || ||||| || || Sbjct 408004 AACATGTGTAATGCTCTATGTATTACCTCATCTCTGCTAATGAGCTCATTGGAGAAAGTC 408063 Query 32718 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAG 32777 ||||| ||||| | ||| | ||| || ||||||||||||| ||||| ||||| || ||| Sbjct 408064 AGTCCAGGCATCAAGCCTCTCTTCTTCAGCCAAAATATGGCAGCAAAAGATCCTGAGAAG 408123 Query 32778 AAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC 32818 || |||||||| ||||| |||||||||| | |||||| || Sbjct 408124 AAGATTCCTTCCACTGCAGCAAAGGCAACCACTCTCTCCCC 408164 >seq178 Length=3009335 Score = 105 bits (116), Expect = 8e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| |||||||| || | || || ||||| |||||||| ||||||| || | || | Sbjct 616908 CCTCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 616849 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | | |||||| ||||| ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 616848 TCAACCAAAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 616789 Query 32803 C 32803 | Sbjct 616788 C 616788 >seq718 Length=1082811 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 63071 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63130 || |||||||| ||||||||||||||||| || || | || || || || | || || Sbjct 694186 ACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCCCTAGCTCGCTGC 694245 Query 63131 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63190 ||||| || || || ||||| || | |||||| ||| | | || || | |||||||| Sbjct 694246 TCCTCCTTCCCGGTGTTCTTCTTCAAATCGAGAAACTCAAAGATGTCCAAGTGCCACGGC 694305 Query 63191 TCCAAGTATATGGC 63204 |||| ||| ||||| Sbjct 694306 TCCAGGTAAATGGC 694319 Score = 86.0 bits (94), Expect = 8e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || ||||| ||||| || | |||| || ||||| || ||||||||||| || || | Sbjct 686352 ACCTGAAACTCTCCTGAGAGGACTCGGCGTGTGTAGATGTTACTGGTATAGGGCTCGATG 686411 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGG 62298 || |||||||| |||||||| ||||| || || ||||| ||||| || Sbjct 686412 GATTCATTATTGCCCAAAATCTGAGCCGTGGAAGCAGTTGGCATTGG 686458 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| || | ||| || ||||||||||| | || || || || || || || || || | Sbjct 702435 CACTGAACACTTTCTTGGTTTCTTTGTGCAAGTTGGAGACTGCGATCCTTGCTGCCAGGA 702494 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 ||||||| || || |||| ||||| || || || | || || ||||| || |||| Sbjct 702495 TGGCATAGTCGGGGTGTTTGGTAGTCAGGGTCGCAGCCGTCTCCGCAGCCAGTGTATCCA 702554 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 ||||| || || ||||| | || | |||||||| || ||||| Sbjct 702555 GCTCTACTGTGGTAACACCGCTGTAAAGACCTTGGATCACTTTCAT 702600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633558205633200