Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq780 134 1e-26 seq5 118 9e-22 >seq780 Length=1004500 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || ||||||| |||| || ||| | | Sbjct 815378 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 815319 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| ||||||||||| ||||| |||||||| Sbjct 815318 GACACCATTGAGAATGTGAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 815259 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || ||||||||| ||||| || ||| ||||| Sbjct 815258 CAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTGTCCGACTACAAC 815199 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || |||||||| || ||| | ||||| Sbjct 815198 ATCCAGAAGGAATCCACCCTGCATCTGGTGCT 815167 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| ||||||| || ||||||| |||| || ||| | | Sbjct 815606 ATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 815547 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| ||||||||||| ||||| |||||||| Sbjct 815546 GACACCATTGAGAACGTGAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 815487 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| ||||| || ||||||||| ||||| || ||| ||||| Sbjct 815486 CAGAGGCTGATCTTTGCTGGCAAGCAGCTAGAAGATGGCCGCACCCTGTCCGACTACAAC 815427 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || |||||||| || ||| | ||||| Sbjct 815426 ATCCAGAAGGAATCCACCCTGCATCTGGTGCT 815395 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || ||||||| |||| || ||| | | Sbjct 815834 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 815775 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| ||||||||||| ||||| |||||||| Sbjct 815774 GACACCATTGAGAATGTGAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 815715 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || ||||||||| ||||| || || ||||| Sbjct 815714 CAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTGTCTGACTACAAC 815655 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || |||||||| || || | ||||| Sbjct 815654 ATCCAGAAGGAATCCACCCTGCACCTGGTGCT 815623 >seq5 Length=7401140 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||| | | ||||| || || ||||| |||| |||||| | | Sbjct 631174 ATGCAGATCTTCGTGAAGCCCCTAACCGGCAAGACCGTCACACTCGAGGTGGAGCCCCGT 631233 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| ||||| || ||| |||| |||||| ||||| || ||||| Sbjct 631234 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACACAGAAGGCATTCCCCCCGACCAG 631293 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| || ||||| ||||||||| ||||| || ||| |||||| Sbjct 631294 CAGAGGCTCATCTTTGCTGGGAAACAGCTAGAAGATGGCCGCACCCTGTCCGACTACAAT 631353 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAA 25228 ||||| || || || || || || | ||||| | || || || || || Sbjct 631354 ATTCAGAAGGAGTCTACCCTGCACCTGGTGCTGCGCCTGAGGGGTGGTAA 631403 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||| | | ||||| || || ||||| |||| |||||| | | Sbjct 630490 ATGCAGATCTTCGTGAAGCCCCTAACCGGCAAGACCGTCACACTCGAGGTGGAGCCCCGT 630549 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| ||||| || ||| |||| |||||| ||||| || ||||| Sbjct 630550 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACACAGAAGGCATTCCCCCCGACCAG 630609 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| || ||||| ||||||||| ||||| || ||| |||||| Sbjct 630610 CAGAGGCTCATCTTTGCTGGGAAACAGCTAGAAGATGGCCGCACCCTGTCCGACTACAAT 630669 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || || || || || | ||||| Sbjct 630670 ATTCAGAAGGAGTCTACCCTGCACCTGGTGCT 630701 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||| | | ||||| || || ||||| |||| |||||| | | Sbjct 630718 ATGCAGATCTTCGTGAAGCCCCTAACCGGCAAGACCGTCACACTCGAGGTGGAGCCCCGT 630777 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| ||||| || ||| |||| |||||| ||||| || ||||| Sbjct 630778 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACACAGAAGGCATTCCCCCCGACCAG 630837 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| || ||||| ||||||||| ||||| || ||| |||||| Sbjct 630838 CAGAGGCTCATCTTTGCTGGGAAACAGCTAGAAGATGGCCGCACCCTGTCCGACTACAAT 630897 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || || || || || | ||||| Sbjct 630898 ATTCAGAAGGAGTCTACCCTGCACCTGGTGCT 630929 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||| | | ||||| || || ||||| |||| |||||| | | Sbjct 630946 ATGCAGATCTTCGTGAAGCCCCTAACCGGCAAGACCGTCACACTCGAGGTGGAGCCCCGT 631005 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| ||||| || ||| |||| |||||| ||||| || ||||| Sbjct 631006 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACACAGAAGGCATTCCCCCCGACCAG 631065 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| || ||||| ||||||||| ||||| || ||| |||||| Sbjct 631066 CAGAGGCTCATCTTTGCTGGGAAACAGCTAGAAGATGGCCGCACCCTGTCCGACTACAAT 631125 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || || || || || | ||||| Sbjct 631126 ATTCAGAAGGAGTCTACCCTGCACCTGGTGCT 631157 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || ||||||| | || |||||| | | Sbjct 630262 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACTCTTGAGGTGGAGCCCAGT 630321 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| ||||| || || ||||| || ||||| Sbjct 630322 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 630381 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| || || || | ||||||| ||||| || || ||||| Sbjct 630382 CAGAGGCTCATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 630441 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||||||||| || || | ||||| Sbjct 630442 ATCCAGAAAGAATCCACCCTGCACCTGGTGCT 630473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433278795199355