Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq5 123 2e-23 seq780 104 2e-17 >seq5 Length=7401140 Score = 123 bits (136), Expect = 2e-23 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 ||||| ||||| || || || || || | ||||| || || |||||||||| ||||| Sbjct 630256 GTAAACATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACTCTTGAGGTGGAG 630315 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 ||| || ||| | || || | || || || || ||||||||||| ||||| ||| Sbjct 630316 CCCAGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCC 630375 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || | || || ||||| || || ||| | || ||| ||||||| | || || Sbjct 630376 GACCAGCAGAGGCTCATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGAC 630435 Query 22393 TACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||||| || |||||||||||| | || | || |||| ||| | || || Sbjct 630436 TACAACATCCAGAAAGAATCCACCCTGCACCTGGTGCTGCGCTTGAGAGGTGG 630488 >seq780 Length=1004500 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || |||| || || || || ||| Sbjct 815378 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 815319 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || || ||||| || || ||||| || || || Sbjct 815318 GACACCATTGAGAATGTGAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 815259 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||||||||| ||| |||| ||| ||||||| | ||||| |||||| Sbjct 815258 CAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTGTCCGACTACAAC 815199 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || || ||||||||| | ||| | || |||| Sbjct 815198 ATCCAGAAGGAATCCACCCTGCATCTGGTGCTGCG 815164 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || || || || || | ||||| || || |||| || || || || || Sbjct 815837 AACATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTTGAGCCC 815778 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | || || | || || || || ||||| || || ||||| || || Sbjct 815777 AGTGACACCATTGAGAATGTGAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGAC 815718 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | || || ||||||||||| ||| |||| ||| ||||||| | || || ||| Sbjct 815717 CAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTGTCTGACTAC 815658 Query 22396 AACATTCAAAAAGAATCCACC 22416 ||||| || || ||||||||| Sbjct 815657 AACATCCAGAAGGAATCCACC 815637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419680339492105