Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq561 95.1 2e-14 seq1342 93.3 9e-14 seq1488 91.5 3e-13 seq356 87.8 4e-12 >seq561 Length=1436896 Score = 95.1 bits (104), Expect = 2e-14 Identities = 65/72 (90%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 |||||||||||||||||||| |||||| ||||||||||||||| ||||| ||||||||| Sbjct 721573 GTCTCTGTGGCGCAATGGACGAGCGCGCTGGACTTCTAATCCAGAGGTTCCGGGTTCGAG 721514 Query 142112 CCCCGCCAGAGA 142123 |||| |||||| Sbjct 721513 TCCCGGCAGAGA 721502 >seq1342 Length=299954 Score = 93.3 bits (102), Expect = 9e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 234664 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 234723 Query 142563 CCCCACATCGGGCAGA 142578 |||||| | |||| || Sbjct 234724 CCCCACGTTGGGCGGA 234739 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 240650 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGAGTCGTGGGTTCGAG 240709 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 240710 CCCCACGTTGGGC 240722 >seq1488 Length=206496 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 97972 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 97913 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 97912 CCCCACGTTGGGC 97900 >seq356 Length=2066398 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||| ||||||||| ||||||||||||| ||||||||||||||| Sbjct 957066 AGCCCGGCTAGCTCAGACGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 957125 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 957126 CCCCACGTTGGGC 957138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027714102945597