Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq780 111 1e-19 seq5 96.9 3e-15 >seq780 Length=1004500 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || ||||| | || | || || | ||| | || ||||| || || |||||||| ||| Sbjct 815377 ATGCCGCCCCTGAGACGCAGCACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCG 815436 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||| || || || ||||| |||| || | ||| ||||| || Sbjct 815437 GACAGGGTGCGGCCATCTTCTAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGG 815496 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||||||||| ||||| || | | |||| |||||| ||| || Sbjct 815497 GGAATGCCTTCTTTGTCCTGGATCTTAGCCTTCACGTTCTCAATGGTGTCACTGGGCTCA 815556 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | ||| | || |||||||||||||| || || || ||||||||| Sbjct 815557 ACCTCGAGGGTGATGGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCATG 815607 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||| ||| || || || |||||| || || || || Sbjct 815182 GTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCTAGCTGCTTGCCG 815241 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| || ||||||||||||||||| ||||| || Sbjct 815242 GCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATCTTAGCCTTC 815301 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || || | ||| | || ||||| ||||| || Sbjct 815302 ACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTC 815361 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 815362 TTCACAAAGATCTGCATG 815379 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||| || || || || |||||| || || || || Sbjct 815638 GTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCTAGCTGCTTGCCG 815697 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| || ||||||||||||||||| ||||| || Sbjct 815698 GCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATCTTAGCCTTC 815757 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || || | ||| | || ||||||||||| || Sbjct 815758 ACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 815817 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 815818 TTCACGAAGATCTGCATG 815835 >seq5 Length=7401140 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || |||||||| || |||||||| || || || || |||||| || || || ||| Sbjct 630458 GTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCA 630399 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| || |||||||| || ||||| ||||| || Sbjct 630398 GCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTC 630339 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || || | || | || ||||||||||| || Sbjct 630338 ACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGAGTGATGGTCTTGCCGGTCAGGGTC 630279 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 630278 TTCACGAAGATCTGCATG 630261 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || || ||||| ||||| ||| || || || |||||| || ||||| ||| Sbjct 630686 GTAGACTCCTTCTGAATATTGTAGTCGGACAGGGTGCGGCCATCTTCTAGCTGTTTCCCA 630627 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| || |||||||||||| |||| ||||| || Sbjct 630626 GCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTGTGTCCTGGATCTTGGCCTTC 630567 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| || || || || | || || || |||||||| || | Sbjct 630566 ACGTTCTCGATGGTGTCACGGGGCTCCACCTCGAGTGTGACGGTCTTGCCGGTTAGGGGC 630507 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 630506 TTCACGAAGATCTGCATG 630489 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || || ||||| ||||| ||| || || || |||||| || ||||| ||| Sbjct 630914 GTAGACTCCTTCTGAATATTGTAGTCGGACAGGGTGCGGCCATCTTCTAGCTGTTTCCCA 630855 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| || |||||||||||| |||| ||||| || Sbjct 630854 GCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTGTGTCCTGGATCTTGGCCTTC 630795 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| || || || || | || || || |||||||| || | Sbjct 630794 ACGTTCTCGATGGTGTCACGGGGCTCCACCTCGAGTGTGACGGTCTTGCCGGTTAGGGGC 630735 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 630734 TTCACGAAGATCTGCATG 630717 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || || ||||| ||||| ||| || || || |||||| || ||||| ||| Sbjct 631142 GTAGACTCCTTCTGAATATTGTAGTCGGACAGGGTGCGGCCATCTTCTAGCTGTTTCCCA 631083 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| || |||||||||||| |||| ||||| || Sbjct 631082 GCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTGTGTCCTGGATCTTGGCCTTC 631023 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| || || || || | || || || |||||||| || | Sbjct 631022 ACGTTCTCGATGGTGTCACGGGGCTCCACCTCGAGTGTGACGGTCTTGCCGGTTAGGGGC 630963 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 630962 TTCACGAAGATCTGCATG 630945 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || || ||||| ||||| ||| || || || |||||| || ||||| ||| Sbjct 631370 GTAGACTCCTTCTGAATATTGTAGTCGGACAGGGTGCGGCCATCTTCTAGCTGTTTCCCA 631311 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| || |||||||||||| |||| ||||| || Sbjct 631310 GCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTGTGTCCTGGATCTTGGCCTTC 631251 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| || || || || | || || || |||||||| || | Sbjct 631250 ACGTTCTCGATGGTGTCACGGGGCTCCACCTCGAGTGTGACGGTCTTGCCGGTTAGGGGC 631191 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 631190 TTCACGAAGATCTGCATG 631173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420086693345004