Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq718 118 2e-21 seq489 87.8 3e-12 >seq718 Length=1082811 Score = 118 bits (130), Expect = 2e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 244322 CCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTG-GGCCAGCTT 244380 || ||||||||||| | ||||||||| ||| || || || | || || ||| |||| Sbjct 690471 CCTTTGCTGACGGGACAGCCCTCGTATGTCTCATATGGCCCTT-GCTCTTTGGCGAGCTC 690529 Query 244381 ACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCG 244440 ||||| | || | ||| ||||||| |||||||| |||||| || ||||| | | Sbjct 690530 GCAGCTGGCCTCCAAAGCGCCGTAGTAAATGGTCTCAAAGATCTGCTGGTTCAGGAGCTG 690589 Query 244441 GGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCAC 244500 ||||| | | |||||| | ||||| |||||| |||| ||||| || ||||| Sbjct 690590 GGCCTCGGGACTCTCAAAGGGGTATCTCATCAGGATGAAGGCGTCCGCCAGGCCTTGCAC 690649 Query 244501 GCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGC 244537 |||||||||||||| | ||| ||| | ||||||||| Sbjct 690650 ACCGATGCCGATGGGGCGGTGGCGCATATTGGAGCGC 690686 Score = 104 bits (114), Expect = 4e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 244999 CTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCT 245058 || ||||| | ||||||||| || || ||||||||||| |||||||||||| | | Sbjct 694182 CTCGACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCCCTAGCTCG 694241 Query 245059 CTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCA 245118 |||||| ||| || ||||||||| ||| || | ||| ||||||| ||| | |||||| Sbjct 694242 CTGCTCCTCCTTCCCGGTGTTCTTCTTCAAATCGAGAAACTCAAAGATGTCCAAGTGCCA 694301 Query 245119 GGGCTCCATGTAGACAGCGAGGGCGCCGGG 245148 ||||||| ||| | || | ||| || || Sbjct 694302 CGGCTCCAGGTAAATGGCAAAGGCCCCAGG 694331 Score = 96.9 bits (106), Expect = 7e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 244704 CCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGG 244763 ||||||| || | ||||||||| || || || ||||| ||||| ||||||||||||| Sbjct 692962 CCACCTCATCTTTGCTGGTGTACTCCACTATTTCCGTGCACAGGTTGCTGCACTTGATGG 693021 Query 244764 TGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCC 244823 ||||||||| ||| || ||| ||| ||| || | |||||| || |||||| | || Sbjct 693022 TGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTACAAGAGTCCTTATACAGCATGTAAGGGG 693081 Query 244824 CCCCGGTCTCGAGCTGGG 244841 |||||||| ||||| Sbjct 693082 TACCGGTCTCAGTCTGGG 693099 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 244096 CACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGAT 244155 ||||||||||||||| || || || ||||| ||||| ||| ||| | |||||||| Sbjct 686351 CACCTGAAACTCTCCTGAGAGGACTCGGCGTGTGTAGATGTTACTGGTATAGGGCTCGAT 686410 Query 244156 GCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAG 244215 | || | ||||||| ||||| |||||| ||||| ||||| || || | || || Sbjct 686411 GGATTCATTATTGCCCAAAATCTGAGCCGTGGAAGCAGTTGGCATTGGAGAAAGGAGGAG 686470 Query 244216 ACTGTTCCTCACGCCGTGCCT 244236 |||||||| || || | ||| Sbjct 686471 GCTGTTCCTAACACCATACCT 686491 >seq489 Length=1618624 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| |||||| | || || || || ||||||||||| || | || || Sbjct 408164 GGGGAGAGAGTGGTTGCCTTTGCTGCAGTGGAAGGAATCTTCTTCTCAGGATCTTTTGCT 408105 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 |||| || ||||| ||| ||| | | |||||| ||||| || ||||| || || ||| Sbjct 408104 GCCATATTTTGGCTGAAGAAGAGAGGCTTGATGCCTGGACTGACTTTCTCCAATGAGCTC 408045 Query 42816 ATCAGCAGGGACGAGG 42831 || ||||| || |||| Sbjct 408044 ATTAGCAGAGATGAGG 408029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944229219895920