Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq448 122 8e-23 >seq448 Length=1749325 Score = 122 bits (134), Expect = 8e-23 Identities = 127/167 (76%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 20237 AGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGA 20296 || || || |||||||||| ||| || || | || ||||| ||||||||||| ||||| Sbjct 713136 AGGCCTGTCACATGAGCAATCATGTACGTGAGCAGTGAATAACTGGCAATGTTGAAAGGC 713195 Query 20297 ACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCT 20356 ||||| | ||||| ||||| || |||||||||||||| || ||||||||||| | | Sbjct 713196 ACTCCTAGTCCCATATCTCCAGATCTCTGATACAGCTGGCAAGAAAGCTCACCATTTACA 713255 Query 20357 ACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGA 20403 ||||| ||||| || | || ||||| || | |||||||| || Sbjct 713256 ACATAGAATTGGCAGAGAGCATGGCAGGGGGGTAAAGCCATCAAGGA 713302 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 20532 CCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGT 20591 |||| ||||| || ||||| |||||||| ||||||||||| |||||||| ||| |||||| Sbjct 715770 CCGCTCCAAAATGTCTCCATTGGAAACCATAAACAGGTCCTAAATCCCCTTCCATTCTGT 715829 Query 20592 GCGCCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTC 20651 | | | || | ||| |||||| | || ||||| ||||| |||||||||| Sbjct 715830 GGGTGAAACCTTGTTTATCCAAGAACTCGCGTGATCCATTGGCATCCCAAATCTTGACTC 715889 Query 20652 C 20652 | Sbjct 715890 C 715890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441321396620280