Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq100 87.8 1e-12 seq687 82.4 6e-11 seq686 82.4 6e-11 seq102 82.4 6e-11 >seq100 Length=3810429 Score = 87.8 bits (96), Expect = 1e-12 Identities = 73/86 (85%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTG--AGTAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| |||||||||||||| | || || | |||||| Sbjct 3154786 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGTTAGAGCGACCAAAGGAA 3154727 Query 115587 CCAAAACTGATATATTGAGCCATTCG 115612 ||| ||||||| || ||||||||||| Sbjct 3154726 CCATAACTGATTTAATGAGCCATTCG 3154701 Score = 87.8 bits (96), Expect = 1e-12 Identities = 73/86 (85%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTG--AGTAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| |||||||||||||| | || || | |||||| Sbjct 3154786 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGTTAGAGCGACCAAAGGAA 3154727 Query 114390 CCAAAACTGATATATTGAGCCATTCG 114415 ||| ||||||| || ||||||||||| Sbjct 3154726 CCATAACTGATTTAATGAGCCATTCG 3154701 >seq687 Length=1151737 Score = 82.4 bits (90), Expect = 6e-11 Identities = 72/86 (84%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCTAAGGAA 115586 |||||||| |||||||||||||||| |||||||||||||| | || | | |||||| Sbjct 117867 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGTTGGAGCGACCAAAGGAA 117808 Query 115587 CCAAAACTGATATATTGAGCCATTCG 115612 ||| ||||||| || ||||||||||| Sbjct 117807 CCATAACTGATTTAATGAGCCATTCG 117782 Score = 82.4 bits (90), Expect = 6e-11 Identities = 72/86 (84%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCTAAGGAA 114389 |||||||| |||||||||||||||| |||||||||||||| | || | | |||||| Sbjct 117867 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGTTGGAGCGACCAAAGGAA 117808 Query 114390 CCAAAACTGATATATTGAGCCATTCG 114415 ||| ||||||| || ||||||||||| Sbjct 117807 CCATAACTGATTTAATGAGCCATTCG 117782 >seq686 Length=1154353 Score = 82.4 bits (90), Expect = 6e-11 Identities = 72/86 (84%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCTAAGGAA 115586 |||||||| |||||||||||||||| |||||||||||||| | || | | |||||| Sbjct 100931 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGTTGGAGCGACCAAAGGAA 100872 Query 115587 CCAAAACTGATATATTGAGCCATTCG 115612 ||| ||||||| || ||||||||||| Sbjct 100871 CCATAACTGATTTAATGAGCCATTCG 100846 Score = 82.4 bits (90), Expect = 6e-11 Identities = 72/86 (84%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCTAAGGAA 114389 |||||||| |||||||||||||||| |||||||||||||| | || | | |||||| Sbjct 100931 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGTTGGAGCGACCAAAGGAA 100872 Query 114390 CCAAAACTGATATATTGAGCCATTCG 114415 ||| ||||||| || ||||||||||| Sbjct 100871 CCATAACTGATTTAATGAGCCATTCG 100846 >seq102 Length=3752443 Score = 82.4 bits (90), Expect = 6e-11 Identities = 72/86 (84%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCTAAGGAA 115586 |||||||| |||||||||||||||| |||||||||||||| | || | | |||||| Sbjct 2603038 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGTTGGAGCGACCAAAGGAA 2602979 Query 115587 CCAAAACTGATATATTGAGCCATTCG 115612 ||| ||||||| || ||||||||||| Sbjct 2602978 CCATAACTGATTTAATGAGCCATTCG 2602953 Score = 82.4 bits (90), Expect = 6e-11 Identities = 72/86 (84%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCTAAGGAA 114389 |||||||| |||||||||||||||| |||||||||||||| | || | | |||||| Sbjct 2603038 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGGTTGGAGCGACCAAAGGAA 2602979 Query 114390 CCAAAACTGATATATTGAGCCATTCG 114415 ||| ||||||| || ||||||||||| Sbjct 2602978 CCATAACTGATTTAATGAGCCATTCG 2602953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397017313192234