Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq5 140 3e-28 seq780 136 4e-27 >seq5 Length=7401140 Score = 140 bits (154), Expect = 3e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || |||||||| || |||||||| || | | |||||| | ||| Sbjct 630473 AGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 630414 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| || ||| | ||||||| |||||||||||| ||||| || || || || Sbjct 630413 TCCAGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC 630354 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || |||| || ||||| || | ||| | |||| Sbjct 630353 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGAGTGATGGTC 630294 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||||||| || || ||||| || ||||| || Sbjct 630293 TTGCCGGTCAGGGTCTTCACGAAGATCTGCATGTT 630259 Score = 116 bits (128), Expect = 4e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || || || ||||| ||||| || | | |||||| | ||| Sbjct 630701 AGCACCAGGTGCAGGGTAGACTCCTTCTGAATATTGTAGTCGGACAGGGTGCGGCCATCT 630642 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||| || || ||| | ||||||| |||||||||||| ||||| |||||| | || Sbjct 630641 TCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTGTGTCC 630582 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | || |||| || ||||| || | || |||||| Sbjct 630581 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACGGGGCTCCACCTCGAGTGTGACGGTC 630522 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||| | | || ||||| || ||||| Sbjct 630521 TTGCCGGTTAGGGGCTTCACGAAGATCTGCAT 630490 Score = 116 bits (128), Expect = 4e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || || || ||||| ||||| || | | |||||| | ||| Sbjct 630929 AGCACCAGGTGCAGGGTAGACTCCTTCTGAATATTGTAGTCGGACAGGGTGCGGCCATCT 630870 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||| || || ||| | ||||||| |||||||||||| ||||| |||||| | || Sbjct 630869 TCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTGTGTCC 630810 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | || |||| || ||||| || | || |||||| Sbjct 630809 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACGGGGCTCCACCTCGAGTGTGACGGTC 630750 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||| | | || ||||| || ||||| Sbjct 630749 TTGCCGGTTAGGGGCTTCACGAAGATCTGCAT 630718 Score = 116 bits (128), Expect = 4e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || || || ||||| ||||| || | | |||||| | ||| Sbjct 631157 AGCACCAGGTGCAGGGTAGACTCCTTCTGAATATTGTAGTCGGACAGGGTGCGGCCATCT 631098 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||| || || ||| | ||||||| |||||||||||| ||||| |||||| | || Sbjct 631097 TCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTGTGTCC 631038 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | || |||| || ||||| || | || |||||| Sbjct 631037 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACGGGGCTCCACCTCGAGTGTGACGGTC 630978 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||| | | || ||||| || ||||| Sbjct 630977 TTGCCGGTTAGGGGCTTCACGAAGATCTGCAT 630946 Score = 116 bits (128), Expect = 4e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || || || ||||| ||||| || | | |||||| | ||| Sbjct 631385 AGCACCAGGTGCAGGGTAGACTCCTTCTGAATATTGTAGTCGGACAGGGTGCGGCCATCT 631326 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||| || || ||| | ||||||| |||||||||||| ||||| |||||| | || Sbjct 631325 TCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTGTGTCC 631266 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | || |||| || ||||| || | || |||||| Sbjct 631265 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACGGGGCTCCACCTCGAGTGTGACGGTC 631206 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||| | | || ||||| || ||||| Sbjct 631205 TTGCCGGTTAGGGGCTTCACGAAGATCTGCAT 631174 >seq780 Length=1004500 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || ||||| || || |||||||| || | | |||||| | ||| Sbjct 815623 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 815682 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||||||| | || |||| ||||||||| || ||||| |||||||| || Sbjct 815683 TCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCC 815742 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || |||| || || || || | || | |||| Sbjct 815743 TGGATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTC 815802 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||||||| || || ||||| || ||||| || Sbjct 815803 TTGCCGGTCAGGGTCTTCACGAAGATCTGCATGTT 815837 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || ||||| || || |||||||| || | | |||||| | ||| Sbjct 815395 AGCACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 815454 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || |||| ||||||||| || ||||| |||||||| || Sbjct 815455 TCTAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCC 815514 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | || |||| || || || || | || | |||| Sbjct 815515 TGGATCTTAGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTC 815574 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||||| ||| || ||||| || ||||| Sbjct 815575 TTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 815606 Score = 131 bits (144), Expect = 2e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || ||||| || || |||||||| || | | |||||| | ||| Sbjct 815167 AGCACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 815226 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||||||| | || |||| ||||||||| || ||||| |||||||| || Sbjct 815227 TCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCC 815286 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || |||| || || || || | || | |||| Sbjct 815287 TGGATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTC 815346 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| || || || || || ||||| Sbjct 815347 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 815378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499586610117480