Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29]
9,317 sequences; 2,270,567,745 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq780 86.0 6e-12
>seq780
Length=1004500
Score = 86.0 bits (94), Expect = 6e-12
Identities = 159/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || | ||| | || ||| |||||||| || |||||||| ||||| || || |||
Sbjct 815377 ATGCCGCCCCTGAGACGCAGCACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCG 815436
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| ||| || | || || || || | |||| | |||||||| ||
Sbjct 815437 GACAGGGTGCGGCCATCTTCTAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGG 815496
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
|||||||||||||| || || || || || | || | || | |||||| | |||
Sbjct 815497 GGAATGCCTTCTTTGTCCTGGATCTTAGCCTTCA-CGTTCTCAATGGTGTCACTGGGCTC 815555
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| ||||| || | || |||||||| ||||| || || || || |||||
Sbjct 815556 AACCTCGAGGGTGATGGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 815606
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451950558577320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |