Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq780 86.0 6e-12 >seq780 Length=1004500 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || | ||| | || ||| |||||||| || |||||||| ||||| || || ||| Sbjct 815377 ATGCCGCCCCTGAGACGCAGCACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCG 815436 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | || || || || | |||| | |||||||| || Sbjct 815437 GACAGGGTGCGGCCATCTTCTAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGG 815496 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 |||||||||||||| || || || || || | || | || | |||||| | ||| Sbjct 815497 GGAATGCCTTCTTTGTCCTGGATCTTAGCCTTCA-CGTTCTCAATGGTGTCACTGGGCTC 815555 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | || |||||||| ||||| || || || || ||||| Sbjct 815556 AACCTCGAGGGTGATGGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 815606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451950558577320