Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq259 116 5e-21 seq41 114 2e-20 >seq259 Length=2521796 Score = 116 bits (128), Expect = 5e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 9736 GTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAG 9795 || ||||| || ||| | || ||| ||||||| || || || || || || | || ||| Sbjct 1695898 GTAGTTTGGAATAACCGTTCATCATCCCATTCTGGATGCTCCTGCTTAAGGATGTCACAG 1695839 Query 9796 ACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCA 9855 |||| |||||| || || ||||||||||| || |||||||||||||| || || | ||| Sbjct 1695838 ACCCGGTTGTGCTCCCTGAGCCATATGGTAGCATACATCATTAAACCTGGGACCAGGCCA 1695779 Query 9856 AACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATA 9915 ||||| || | || || | || | |||| || || || | || | ||||| ||| Sbjct 1695778 AACACCTCCTGTCCTACAGAGAATTGTAGATGCTCAGGAACATGAGGAGGATACATCATT 1695719 Query 9916 TGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 | | || || || || || || || || |||||||| || |||| Sbjct 1695718 TCTGCTTGAGTATCCTTCACTGTTGGAGGGTACATTTCTCCACCAAT 1695672 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 10389 ACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTATA 10448 |||||| || || | || || |||||||| || | || || || || | ||| ||||| Sbjct 1694252 ACCTTTAACACCCATGGGTGTTGGGCAGTCTCGTGCTACTGGCGGAAGGGCTCTTGTATA 1694193 Query 10449 ATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGCGG 10508 ||||| || || ||||| ||||||||||| ||||| || || || |||||| || Sbjct 1694192 GTAGGAAAGGTTGGAAAAGGCTTCCCAGCTTTTGTAACCGTATTCACTGTTGTATGTTGG 1694133 Query 10509 GGGACTGTCAATCATCTCGGACCTGGCTA 10537 |||||||||||||| | ||||| |||| Sbjct 1694132 GGGACTGTCAATCAAATGCGACCTTGCTA 1694104 Score = 84.2 bits (92), Expect = 3e-11 Identities = 115/159 (72%), Gaps = 4/159 (3%) Strand=Plus/Minus Query 9568 TGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTACTGAAA--GGCGG 9625 |||||| |||| || || ||||| || || || |||| ||||||||||||||| || Sbjct 1697027 TGCCAGTGGTATAGAGTGTTGAATTCAGCTGCAATTCTGTTCTGGTACTGAAACTTTTGG 1696968 Query 9626 TACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGCTGAGTTGCTGGA 9685 | ||||| | ||| || ||||| | |||| ||| ||||| ||||| | || || | Sbjct 1696967 T--TAAACAGAAGCTCAGGATCAAACTTCAGCTTGAAATGGTAGCCGCTCAAGTGTTGCA 1696910 Query 9686 CATACTGTGTGATTATAATGTTAATGGTTTCCCCGGTAA 9724 |||| | | || | ||| || ||||| ||||| |||| Sbjct 1696909 CATAGTCTTCAATGACAATCTTGATGGTCTCCCCTGTAA 1696871 >seq41 Length=4869164 Score = 114 bits (126), Expect = 2e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 8966 CCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCT 9025 ||||||||||||||||| ||||||||| | |||||||||||| |||| ||| ||||| Sbjct 2063224 CCGCCGAAGGTGCTGGGCTTCCAGTACACGGGGGAGCAGATGGGGTTCCCCAGCAGCCCC 2063165 Query 9026 TTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGC 9085 || | ||| || || ||||| | ||| | |||||||| || |||||||| || || Sbjct 2063164 TTGAGGGAGAAGGGGGCCCCGATCTCCACCATGCTCTCCCCAAAGATGGCGTTGGCTTGC 2063105 Query 9086 GGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCT 9145 || || || | | | || | ||||| || | || |||| |||||| || || | Sbjct 2063104 GGCTTCTCCAGCAGCAGCCCCGGGTAGAACTCCAGGGCGTCGATGTCGCCGTACAGCTCC 2063045 Query 9146 TCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 ||| || || || |||||| ||| ||| || Sbjct 2063044 GCCAGCTGCGCCGCCTTCTCCTCCTCTCCTGCA 2063012 Score = 84.2 bits (92), Expect = 3e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 9715 TCCCCGGTAATGATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGT 9774 || ||| | | ||| || || | || || || | ||||||||| ||||| |||||| Sbjct 2061579 TCACCGATGAGGATGAGCCGGGCCGTCTGGAAGAGCTGCTCGTCGCCCCACGTCGGGTGC 2061520 Query 9775 TCGTGTTTGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATC 9834 || || || || || || ||||| | |||||| || | ||||| | ||| ||||||||| Sbjct 2061519 TCCTGCTTCAGCACGTCACAGACGCGGTTGTGCTCGCGGAGCCAGAGGGTCGCGTACATC 2061460 Query 9835 ATTAAACCCGGCACTAAACCAAACACTTCATTCCCCACTGC 9875 || | || |||| | |||||||| || | ||||| || Sbjct 2061459 ATCAGCCCGGGCAGGAGCCCAAACACCTCCTGGCCCACGGC 2061419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723643712827800