Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq780 134 2e-26 seq5 131 2e-25 >seq780 Length=1004500 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || || | ||||| ||||||||||| || ||||| ||||| ||||||||||| Sbjct 815152 CCACCCCTGAGACGCAGCACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 815211 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || |||||||||||||| || |||| | ||||||||| | || Sbjct 815212 AGGGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 815271 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || || |||||| |||||| ||| | || | | ||||| || | || || Sbjct 815272 ATGCCTTCTTTGTCCTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 815331 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||||| ||||| ||||| || || |||||||| ||||| Sbjct 815332 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 815378 Score = 129 bits (142), Expect = 7e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||||| ||||||||||| || ||||| ||||| |||||||||| Sbjct 815378 TGCCGCCCCTGAGACGCAGCACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGG 815437 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||||||||| || || |||| | ||||||||| | | Sbjct 815438 ACAGGGTGCGGCCATCTTCTAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGG 815497 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || || |||||| |||||| ||| | || | | ||||| || | || | Sbjct 815498 GAATGCCTTCTTTGTCCTGGATCTTAGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAA 815557 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||||| ||||| ||||| || || || ||||| ||||| Sbjct 815558 CCTCGAGGGTGATGGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 815606 Score = 129 bits (142), Expect = 7e-25 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||||| |||||| |||| || ||||| ||||| |||||||| | Sbjct 815606 TGCCGCCCCTGAGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAG 815665 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || |||||||||||||| || |||| | ||||||||| | | Sbjct 815666 ACAGGGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGG 815725 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || || |||||| |||||| ||| | || | | ||||| || | || | Sbjct 815726 GAATGCCTTCTTTGTCCTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAA 815785 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGCAC 46600 | || | |||||||| ||||| ||||| || || || ||||| ||||| ||| || Sbjct 815786 CCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATGTTGAAC 815841 >seq5 Length=7401140 Score = 131 bits (144), Expect = 2e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||| || |||| |||||| |||| || || || ||||| |||||||| | Sbjct 630490 TGCCACCTCTCAAGCGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAG 630431 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || |||||||| || || || || | | ||||||||||| | Sbjct 630430 ACAGGGTGCGGCCATCTTCCAGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCGGGGG 630371 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||||||| |||||| ||| | || | | ||||| || | |||| Sbjct 630370 GAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCA 630311 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 | || | |||||||| ||||| ||||| || || || ||||| ||||| || Sbjct 630310 CCTCAAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATGTT 630259 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||| || |||| |||||| |||| ||| |||||| || ||||||||||||| Sbjct 630718 TGCCACCTCTCAAGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGAATATTGTAGTCGG 630659 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||| || || || || || | | ||||||||||| | Sbjct 630658 ACAGGGTGCGGCCATCTTCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGGGG 630599 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || || ||||| |||||| ||| | || | | ||||| | | |||| Sbjct 630598 GAATGCCTTCTGTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACGGGGCTCCA 630539 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||| ||| ||||| || || | || || ||||| ||||| Sbjct 630538 CCTCGAGTGTGACGGTCTTGCCGGTTAGGGGCTTCACGAAGATCTGCAT 630490 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||| || |||| |||||| |||| ||| |||||| || ||||||||||||| Sbjct 630946 TGCCACCTCTCAAGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGAATATTGTAGTCGG 630887 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||| || || || || || | | ||||||||||| | Sbjct 630886 ACAGGGTGCGGCCATCTTCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGGGG 630827 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || || ||||| |||||| ||| | || | | ||||| | | |||| Sbjct 630826 GAATGCCTTCTGTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACGGGGCTCCA 630767 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||| ||| ||||| || || | || || ||||| ||||| Sbjct 630766 CCTCGAGTGTGACGGTCTTGCCGGTTAGGGGCTTCACGAAGATCTGCAT 630718 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||| || |||| |||||| |||| ||| |||||| || ||||||||||||| Sbjct 631174 TGCCACCTCTCAAGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGAATATTGTAGTCGG 631115 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||| || || || || || | | ||||||||||| | Sbjct 631114 ACAGGGTGCGGCCATCTTCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGGGG 631055 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || || ||||| |||||| ||| | || | | ||||| | | |||| Sbjct 631054 GAATGCCTTCTGTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACGGGGCTCCA 630995 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||| ||| ||||| || || | || || ||||| ||||| Sbjct 630994 CCTCGAGTGTGACGGTCTTGCCGGTTAGGGGCTTCACGAAGATCTGCAT 630946 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| ||| |||||| || |||||||||||||| || ||||| | Sbjct 631388 CGCAGCACCAGGTGCAGGGTAGACTCCTTCTGAATATTGTAGTCGGACAGGGTGCGGCCA 631329 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||| || || || || || | | ||||||||||| || | || || || Sbjct 631328 TCTTCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTGTG 631269 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||| | || | | ||||| | | ||||| || | |||| | Sbjct 631268 TCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACGGGGCTCCACCTCGAGTGTGACG 631209 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| || || | || || ||||| ||||| Sbjct 631208 GTCTTGCCGGTTAGGGGCTTCACGAAGATCTGCAT 631174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565172570922840