Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq780 158 1e-33 seq5 149 6e-31 >seq780 Length=1004500 Score = 158 bits (174), Expect = 1e-33 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| |||| || ||| ||| Sbjct 815606 ATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 815547 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| |||||||| || |||||| | ||||| Sbjct 815546 GACACCATTGAGAACG-TGAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCA 815488 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| ||||| || || | |||||||| ||||||||| Sbjct 815487 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTAGAAGATGGCCGCACCCTGTCCGACTACAA 815428 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| |||||| | || |||||| ||||||||||| | || |||||| Sbjct 815427 CATCCAGAAGGAATCCACCCTGCATCTGGTGCTGCGTCTCAGGGGCGGC 815379 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || || || ||||| ||||||||| |||| || ||| || Sbjct 815837 AACATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTTGAGCCC 815778 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| |||||||| || |||||| | ||| Sbjct 815777 AGTGACACCATTGAGAATGTGAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGAC 815718 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| |||| || | || ||||| ||||| || || | |||||||| |||||| Sbjct 815717 CAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTGTCTGACTAC 815658 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| |||||| | || ||||| ||||||||||| | || |||||| Sbjct 815657 AACATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGTCTCAGGGGCGGC 815607 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| |||| || ||| ||| Sbjct 815378 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 815319 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| |||||||| || |||||| | ||||| Sbjct 815318 GACACCATTGAGAATGTGAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 815259 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| ||||| || || | |||||||| |||||||||| Sbjct 815258 CAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTGTCCGACTACAAC 815199 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| |||||| | || |||||| ||||||||||| | || || || Sbjct 815198 ATCCAGAAGGAATCCACCCTGCATCTGGTGCTGCGTCTCAGGGGTGG 815152 >seq5 Length=7401140 Score = 149 bits (164), Expect = 6e-31 Identities = 172/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || ||||| || || || || ||||| |||||||| | || || ||| | Sbjct 630258 AAACATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACTCTTGAGGTGGAGCC 630317 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 || |||| | | | | | || | || |||| ||||| ||||| |||||| |||| Sbjct 630318 CAGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGA 630377 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| ||||||| | || || || |||||||| || | |||||||| ||||| Sbjct 630378 CCAGCAGAGGCTCATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTA 630437 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| || ||| | || ||||| |||||||||| |||||||| ||| Sbjct 630438 CAACATCCAGAAAGAATCCACCCTGCACCTGGTGCTGCGCTTGAGAGGTGGC 630489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500114548625280