Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq124 98.7 8e-15 seq861 95.1 9e-14 seq16 89.7 4e-12 >seq124 Length=3518557 Score = 98.7 bits (108), Expect = 8e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || | |||||| |||| ||||||||| ||||||||||| || |||| | || Sbjct 2050237 TTTTTGTCTAAACCATAAGCAATAGCAGCAGCTGTTGGTTCATTGATGATTCGGAGCACG 2050296 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || ||||| ||||| | || |||||||| ||||| || | || || || || || || Sbjct 2050297 TTGAGACCTGCAATAGTACCAGCATCTTTTGTGGCCTGGCGCTGGGAGTCATTGAAGTAG 2050356 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTAC 518313 || || ||||| | || |||| ||| || Sbjct 2050357 GCTGGTACAGTGACCACAGCATTAGTAAC 2050385 Score = 87.8 bits (96), Expect = 1e-11 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 |||| ||||||||| || ||||||||||| | |||||| ||||||||||| ||||| || Sbjct 2048403 GCAGACACATTAAGGATGCCATTGGCATCAATATCAAAAGTGACTTCAATCTGAGGTACG 2048462 Query 517319 CCTCTCTGAGCAGGTGGGATCCC 517341 ||||| |||| || ||||| || Sbjct 2048463 CCTCTAGGAGCTGGGGGGATGCC 2048485 >seq861 Length=860652 Score = 95.1 bits (104), Expect = 9e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052 ||| || || || | || ||||| |||||||| |||||| | ||| | | ||||| Sbjct 702493 TGTTGTTGCTACTGTGGCTTTTGGAATGGGTATCAATAAAGCAGATATCCGGAGAGTTAT 702552 Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112 |||||||||||| || ||| | || ||| || |||||||||||||| ||||| || || Sbjct 702553 TCATTATGGAGCCCCTAAGGAAATGGAATCATACTATCAAGAAATTGGAAGAGCTGGCCG 702612 Query 367113 TGATGGA 367119 ||||||| Sbjct 702613 TGATGGA 702619 >seq16 Length=6129213 Score = 89.7 bits (98), Expect = 4e-12 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 518154 CTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 518213 ||||||||| ||||| | |||||| || || |||||||||||||| |||||||| | Sbjct 3489675 CTTTGTCTTCAGACTTATCTAAACCATAAGCCAAGGCAGCAGCAGTTGGCTCATTAATCA 3489616 Query 518214 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTG 518262 ||||| |||||| | ||||||||| ||| ||||| || || || || Sbjct 3489615 CTCTCAGAACATTCAATCCAGCAATTTGTCCGGCATCCTTGGTAGCCTG 3489567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780360059769802