Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq81 257 2e-63 seq124 183 4e-41 seq811 102 1e-16 >seq81 Length=4110448 Score = 257 bits (284), Expect = 2e-63 Identities = 819/1259 (65%), Gaps = 52/1259 (4%) Strand=Plus/Minus Query 6926 GTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAAC 6985 ||||| | || ||| || |||| || || ||||| || |||||||||| || | | Sbjct 3336816 GTCATGACGCCGCCCGCCGTCTCGATGCCGAGCGACAGCGGCGTCACGTCCAGCAGCAGC 3336757 Query 6986 AGGTCTTGAACAGATTCGTTCC--CTT--CACCCGTTAAGATGGCGGCTTGGACCGTCGC 7041 ||||| || || ||| ||| ||| | ||| | | ||||||||| || |||| ||| Sbjct 3336756 AGGTCCTGCACG--TTC--TCCGACTTGTCGCCCATGAGGATGGCGGCCTGCACCGCCGC 3336701 Query 7042 CCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATA 7101 ||||| || ||||||||||||||||| || | || ||||| || || || || || | Sbjct 3336700 GCCGTACGCCACCGCCTCATCGGGGTTGATGCTCTTGTTCAGCTCCTTGCCATTGAAGAA 3336641 Query 7102 ATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTC 7161 ||| | || | || || || ||||| || ||||| || || |||| ||||| || Sbjct 3336640 GTCCTGCAGCAGCTTCTGGATCTTGGGGATGCGCGTCGAGCCGCCCACCAGCACGATCTC 3336581 Query 7162 ATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACA 7221 | ||| | | || || | ||| | ||| || || | || || || || |||| Sbjct 3336580 CTGCACCTGCCCCTTGTCCAGCTTGGCGTCGCGCAGCGCCTTCTCCACGGGCTCCAGCGT 3336521 Query 7222 TTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAA 7281 ||||||| ||| ||| ||||| || || || || || ||||| || ||||| Sbjct 3336520 GCCGCGGAACAGGTCGGCGTTCAGCTCCTCGAAGCGCGCCCGCGTGATGGACGTGTAGAA 3336461 Query 7282 ATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGA---TAA 7338 || | ||| ||| | | ||| || || || ||| | | || ||| || || | Sbjct 3336460 GTCGATGCCCTCGAACAGCGAGTCGATCTCGATGCTGGCCTG---CGTGGAGGAGCTCAG 3336404 Query 7339 CGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGA 7398 ||| ||||| || ||||| |||||||| || | || || | || ||| ||| ||| Sbjct 3336403 CGTGCGCTTGGCCCGCTCGCACGCCGTGCGCAGCCGCCGCACCGCCCGCTTGTTGCCGCC 3336344 Query 7399 AATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATC 7458 || || ||| || || || || ||||| || |||||| | | | || Sbjct 3336343 GATGTCGCGCTTGTGCTTGCGCTTGAACTCCTCCACGAAGTGCGTCACCATGCGGTTGTC 3336284 Query 7459 GAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCC 7518 ||| || || || |||| ||| || || ||||| |||| || || || ||||| || | Sbjct 3336283 GAAGTCCTCGCCGCCCAGGTGCGTGTCGCCCGCCGTCGACTTCACCTCGAAGATGCCGTC 3336224 Query 7519 TTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT 7578 || ||| | | | || || || || || || || |||||||| || || || ||||| Sbjct 3336223 CTCGATGGTGAGGATGGACACGTCGAAGGTGCCGCCGCCCAGGTCGAAGATCAGCACGTT 3336164 Query 7579 CGTATCGTCG------TCTTTGTTCTTATCGAGACCGTACGCGAT--------------- 7617 | | ||| || | ||||| || || ||||| ||||| Sbjct 3336163 CTTCTCGCCGGCGCGCGCGCCCTTCTTGTCCAGCCCGTAGGCGATGGCGCCGGCCGGGGG 3336104 Query 7618 -----AGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTT 7672 ||| ||||||| || || || || || || | ||| ||||| | || || Sbjct 3336103 CGGGCCGCCCCCGCCGTGGGCTCGTTGATGATGCGCATCACGTTGAGGCCCGTGATGGTG 3336044 Query 7673 GCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACC 7732 |||| || || || || || || ||||| ||||| |||||||| || ||||| | ||| Sbjct 3336043 CCCGCGTCCTTGGTGGCCTGGCGCTGCGAGTCGTTGAAGTAGGCGGGCACCGTGATGACG 3335984 Query 7733 GCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACC 7792 || | | || || || || || | || ||||| || ||||| || || || ||| Sbjct 3335983 GCATTCTGCACCTTGCGGCCCAGGTAGGCCTCGGCGATCTCCTTCATCTTAGTCAGCACC 3335924 Query 7793 ATCGATGAAATCTCTTCAGCCGCAAACTGT-TTCGTTTCACCGTTAAAATCAACTTCAAT 7851 || || ||||| || | | | | || || | || || || | || || | | Sbjct 3335923 ATGGAGCTGATCTCCTC-GGGGAAGAAGGTCTTGGCCTCGCCCTTGTACTCCACCTGCAC 3335865 Query 7852 CATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTG 7911 | |||| || |||| | ||| | || | | | ||| | ||||| || | || Sbjct 3335864 CTTGGGCTT-GCCGC--CCTCGGACACTACGTGGAAGGGCCAGTGCTTCATGTCCGCCTG 3335808 Query 7912 GACCTGT-TGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTT 7970 | |||| |||| |||| | ||||| || ||||| || || || | ||||| Sbjct 3335807 CA-CTGTGGGGTCGTCGTACTTGCGGCCGATGAGGCGCTTGGCGTCGAAGATGGTGTTGG 3335749 Query 7971 TGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCG 8030 ||||||||||||| |||||||| |||||||| ||||| || || || | |||| Sbjct 3335748 TGGGGTTCATGGCCACCTGGTTCTTGGCCGCGTCGCCGATGAGGCGCTC---TGTGTCCG 3335692 Query 8031 TAAACGCGACGTACGATGGG-GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACG 8089 | || || ||||| | |||| || || || || || |||||||| ||||| || || || Sbjct 3335691 TGAAGGCCACGTA-GCTGGGCGTGGTGCGGTTGCCCTGGTCGTTGGCAATGATCTCCACC 3335633 Query 8090 CGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 | | | || ||||||| ||||| || ||||| || || | || || ||||| || Sbjct 3335632 TTGCCATGCTGGAAGACGCCCACGCAGGAGTACGTGGTGCCCAGGTCGATGCCGATCGC 3335574 >seq124 Length=3518557 Score = 183 bits (202), Expect = 4e-41 Identities = 361/533 (68%), Gaps = 6/533 (1%) Strand=Plus/Plus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || ||||| || || || ||||| || || || | || ||||||||||| || || || Sbjct 2049559 GCACCGTAAGCTACAGCTTCATCAGGATTGATGCTCTTGTTCAGTTCTTTGCCATTGAAG 2049618 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 | || || | || ||||| || ||||| || || || ||||| ||||| || || Sbjct 2049619 AAGTCTTGTAGGAGTTTCTGAATCTTTGGGATGCGAGTGGACCCACCAACCAATACTATG 2049678 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCA-- 7217 || | | | ||||| |||| ||| | || || | | || || || || |||| Sbjct 2049679 TCGTGGATCTGGGATTTGTCGAGCTTGGCATCCCGCAAGGCCTTCTCCACGGGGTCCAGC 2049738 Query 7218 -TACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTA 7276 ||| |||||||| || | || || ||||| || || || || || || || Sbjct 2049739 GTACC---ACGGAACAGATCAGCATTCAACTCTTCAAAGCGAGCTCGTGTGATTGAGGTG 2049795 Query 7277 TAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGAT 7336 ||||| |||| ||| || || | |||||||| ||||| | | || | | || || Sbjct 2049796 TAGAAGTCAATGCCCTCATAGAGAGAATCAATCTCAATACTGGCCTGCGTGCTGGAGGAG 2049855 Query 7337 AACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCG 7396 | || |||||||| || ||||| || || || | ||| |||| || | | ||| | Sbjct 2049856 AGGGTACGCTTTGCACGTTCACATGCTGTGCGAAGACGGCGAACTGCTCTCTTGTTTTCA 2049915 Query 7397 GAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAA 7456 || |||||||| || || ||||| || || || |||||| | | ||| | Sbjct 2049916 CTGATGTCTTTCTTGTGCTTGCGTTTGAATTCAGCAATGAAGTGGTTGACCATTCTGTTA 2049975 Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || ||||| ||||||| ||| ||||| || || || | || |||||||||||||| Sbjct 2049976 TCAAAGTCTTCTCCACCCAGGTGGGTATCGCCTGCAGTGGACTTCACTTCAAAGATACCA 2050035 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAAT 7569 ||||||| | | | || ||||| || || ||||||||||||||||| || Sbjct 2050036 TCTTCAATTGTGAGAATAGACACATCGAAAGTGCCACCACCCAGGTCAAAGAT 2050088 Score = 96.9 bits (106), Expect = 4e-15 Identities = 134/187 (72%), Gaps = 3/187 (2%) Strand=Plus/Plus Query 7956 CAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGAC 8015 ||||||||||||| ||||||||||||| ||||||||||| || || ||||| | | Sbjct 2051579 CAAAAACTGTGTTGGTGGGGTTCATGGCAACCTGGTTCTTCGCAGCATCACCGATCAACC 2051638 Query 8016 GTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCG 8075 || | | |||| || |||||||| || || || | || || |||||||| | Sbjct 2051639 TCTCGGTGT---CCGTGAAGGCGACGTAGCTCGGCGTGGTCCTGTTACCCTGGTCGTTGG 2051695 Query 8076 CAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAAT 8135 | || ||||| || | | | ||| ||||||||||||| || || || || || | || Sbjct 2051696 CGATGATTTCCACCTTGCCATGTTGGAAGACGCCGACGCAGGAGTAGGTGGTCCCGAGAT 2051755 Query 8136 CAATACC 8142 |||| || Sbjct 2051756 CAATCCC 2051762 Score = 82.4 bits (90), Expect = 1e-10 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 || || || | ||| || || ||||| || || ||||||||||| || || || || | Sbjct 2050237 TTTTTGTCTAAACCATAAGCAATAGCAGCAGCTGTTGGTTCATTGATGATTCGGAGCACG 2050296 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || || || |||||||| | |||||||| || || || || || || || || |||||| Sbjct 2050297 TTGAGACCTGCAATAGTACCAGCATCTTTTGTGGCCTGGCGCTGGGAGTCATTGAAGTAG 2050356 Query 7715 GCCGGGACCGTTACGACCGC 7734 || || || || || || || Sbjct 2050357 GCTGGTACAGTGACCACAGC 2050376 >seq811 Length=949033 Score = 102 bits (112), Expect = 1e-16 Identities = 241/360 (67%), Gaps = 8/360 (2%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || || || |||| ||| |||||||| || || || || || || ||||| || Sbjct 460960 TCAAAGTCCTCCCCGCCCAGGTGGGTATCCCCAGCCGTGGCCTTCACCTCGAAGATGCCA 460901 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 |||| | | | || ||||| || || ||||| || ||||| || | ||| ||| Sbjct 460900 TCTTCCACCCGCAGGACGGACACATCGAAGGTGCCACCCCCTAGGTCGAAGACGAGCACG 460841 Query 7577 TT---CGTATCGTCGTCTTTGTTCT---TATCGAGACCGTACGCGATAGCCGCCGCCGTT 7630 | || ||| | || | || | || || || || ||||| || |||||||| Sbjct 460840 TGGCGCGCCTCGCCCCCTGGGCTCCCGGTCTCCAGCCCATAGGCGATGGCAGCCGCCGTG 460781 Query 7631 GGTTCATTAATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGC 7689 ||||| || | || || ||| || ||||||||||| || |||| || | || || Sbjct 460780 GGTTCGTTGAGGATCTTGAGGAC-GTGGAGGCCAGCAATGGTGCCCGCGTCGATGGTGGC 460722 Query 7690 TTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTT 7749 | || |||| ||||| ||||||||||| || || | ||| || | ||||| | Sbjct 460721 GCGGCGCTGCGCGTCGTTGAAGTAGGCCGGCACGGTGATGACGGCTTGGGTGACCGGGTG 460662 Query 7750 ACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 ||||| || | ||| || | | ||||| |||| || ||||| | || ||||| || Sbjct 460661 GCCGAGGTAGGCTTCGGCCGTCTGCTTCATCTTGGCCAGCACCATGGCAGAGATCTCCTC 460602 Score = 84.2 bits (92), Expect = 3e-11 Identities = 139/200 (70%), Gaps = 3/200 (2%) Strand=Plus/Minus Query 7943 AGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCG 8002 || ||||| ||||| || || ||||| | |||||| | ||| | |||| |||| || | Sbjct 460471 AGCCGCTTGGCATCGAAGACGGTGTTGTGGGGGTTGAGGGCAGCTTGGCTCTTGGCAGGA 460412 Query 8003 TCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTC 8062 ||||| | || || || | |||| || || ||||| ||||| || || || Sbjct 460411 TCCCCAACCAGGCGCTCGGTGG---CCGTGAAGGCCACGTAGCTGGGGGTGGTGCGGTTG 460355 Query 8063 CCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATAC 8122 ||||||||||| || || || || || | ||| || |||| ||||||||| || || Sbjct 460354 CCTTGGTCGTTGGCGATGATCTCCACCTTGCCGTGCTGGCAGATGCCGACGCAGGAGTAG 460295 Query 8123 GTTGTTCCTAAATCAATACC 8142 || || || | ||||| || Sbjct 460294 GTGGTGCCCAGGTCAATGCC 460275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635058830846280