Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq780 134 3e-26 seq5 122 2e-22 >seq780 Length=1004500 Score = 134 bits (148), Expect = 3e-26 Identities = 165/224 (74%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || || || || || ||||| || || || || ||||| |||| || || Sbjct 815386 CTGAGACGCAGCACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTG 815445 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||||| |||||||| || || ||||| || | || ||||| || ||||||||| Sbjct 815446 CGGCCATCTTCTAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCT 815505 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCA 195096 |||||||| || || || ||| ||||||||||||||||| ||| || || || Sbjct 815506 TCTTTGTCCTGGATCTTAGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCAACCTCG 815562 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || |||| ||| || ||||| | ||||| Sbjct 815563 AGGGTGATGGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 815606 Score = 125 bits (138), Expect = 2e-23 Identities = 163/224 (73%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || || ||||| || ||||| || || || || ||||| || | || || Sbjct 815614 CTGAGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTG 815673 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||||| |||||||| || || ||||| || | || ||||| || ||||||||| Sbjct 815674 CGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCT 815733 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCA 195096 |||||||| || || || ||| || |||||||||||||| ||| || || || Sbjct 815734 TCTTTGTCCTGGATCTTAGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCG 815790 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || |||| || || ||||| | ||||| Sbjct 815791 AGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 815834 Score = 122 bits (134), Expect = 2e-22 Identities = 162/224 (72%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || || || || || ||||| || || || || ||||| |||| || || Sbjct 815158 CTGAGACGCAGCACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTG 815217 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||||| |||||||| || || ||||| || | || ||||| || ||||||||| Sbjct 815218 CGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCT 815277 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCA 195096 |||||||| || || || ||| || |||||||||||||| ||| || || || Sbjct 815278 TCTTTGTCCTGGATCTTAGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCG 815334 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || |||| || || || || | ||||| Sbjct 815335 AGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 815378 >seq5 Length=7401140 Score = 122 bits (134), Expect = 2e-22 Identities = 155/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||| ||||| || || ||||| || | || || | |||||||| Sbjct 630470 ACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 630411 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || ||||| || |||||||| || ||||| || Sbjct 630410 AGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGG 630351 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || |||||||||||||| ||| ||||| ||||| || | ||| Sbjct 630350 ATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCCACCTCAAGAGTGATGGTC 630294 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || ||||| | ||||| Sbjct 630293 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 630262 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || ||||||||||| |||| || || | |||||||| Sbjct 630698 ACCAGGTGCAGGGTAGACTCCTTCTGAATATTGTAGTCGGACAGGGTGCGGCCATCTTCT 630639 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || || ||||| || | || ||||| || |||||||||||| |||| || Sbjct 630638 AGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTGTGTCCTGG 630579 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| |||||||| |||||||| ||||| || || || || ||||| Sbjct 630578 ATCTTGGCCTTCACGTTCTCGATGGTGTCACGGGGCTCCACCTCGAGTGTGACGGTCTTG 630519 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | | || ||||| | ||||| Sbjct 630518 CCGGTTAGGGGCTTCACGAAGATCTGCAT 630490 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || ||||||||||| |||| || || | |||||||| Sbjct 630926 ACCAGGTGCAGGGTAGACTCCTTCTGAATATTGTAGTCGGACAGGGTGCGGCCATCTTCT 630867 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || || ||||| || | || ||||| || |||||||||||| |||| || Sbjct 630866 AGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTGTGTCCTGG 630807 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| |||||||| |||||||| ||||| || || || || ||||| Sbjct 630806 ATCTTGGCCTTCACGTTCTCGATGGTGTCACGGGGCTCCACCTCGAGTGTGACGGTCTTG 630747 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | | || ||||| | ||||| Sbjct 630746 CCGGTTAGGGGCTTCACGAAGATCTGCAT 630718 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || ||||||||||| |||| || || | |||||||| Sbjct 631154 ACCAGGTGCAGGGTAGACTCCTTCTGAATATTGTAGTCGGACAGGGTGCGGCCATCTTCT 631095 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || || ||||| || | || ||||| || |||||||||||| |||| || Sbjct 631094 AGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTGTGTCCTGG 631035 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| |||||||| |||||||| ||||| || || || || ||||| Sbjct 631034 ATCTTGGCCTTCACGTTCTCGATGGTGTCACGGGGCTCCACCTCGAGTGTGACGGTCTTG 630975 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | | || ||||| | ||||| Sbjct 630974 CCGGTTAGGGGCTTCACGAAGATCTGCAT 630946 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || ||||||||||| |||| || || | |||||||| Sbjct 631382 ACCAGGTGCAGGGTAGACTCCTTCTGAATATTGTAGTCGGACAGGGTGCGGCCATCTTCT 631323 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || || ||||| || | || ||||| || |||||||||||| |||| || Sbjct 631322 AGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTGTGTCCTGG 631263 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| |||||||| |||||||| ||||| || || || || ||||| Sbjct 631262 ATCTTGGCCTTCACGTTCTCGATGGTGTCACGGGGCTCCACCTCGAGTGTGACGGTCTTG 631203 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | | || ||||| | ||||| Sbjct 631202 CCGGTTAGGGGCTTCACGAAGATCTGCAT 631174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109349156674139