Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq448 89.7 4e-13 seq774 87.8 1e-12 >seq448 Length=1749325 Score = 89.7 bits (98), Expect = 4e-13 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 29868 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29927 ||| || || || ||||| |||||||||||||| || || || ||||| ||||| || || Sbjct 713135 TAGGCCTGTCACATGAGCAATCATGTACGTGAGCAGTGAATAACTGGCAATGTTGAAAGG 713194 Query 29928 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCT 29987 || || || ||||| || || || ||||| || ||||| || || ||||| || | Sbjct 713195 CACTCCTAGTCCCATATCTCCAGATCTCTGATACAGCTGGCAAGAAAGCTCACCATTTAC 713254 Query 29988 CACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCAT 30029 || || || || || | | ||||| || || | |||||| Sbjct 713255 AACATAGAATTGGCAGAGAGCATGGCAGGGGGGTAAAGCCAT 713296 Score = 89.7 bits (98), Expect = 4e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 30149 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30208 |||| || | || || ||||| ||||| ||||| ||||| || || || ||||| | | Sbjct 715755 TCATATCTTTATATTCCGCTCCAAAATGTCTCCATTGGAAACCATAAACAGGTCCTAAAT 715814 Query 30209 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 | || || ||||| ||| || || ||||| || || | || || ||||| | Sbjct 715815 CCCCTTCCATTCTGTGGGTGAAACCTTGTTTATCCAAGAACTCGCGTGATCCATTGGCAT 715874 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 |||| ||||| || ||||| |||||||||||||| | ||||| || || Sbjct 715875 CCCAAATCTTGACTCCCTTTTCGGAGAGCTCTTTAGCATTTGTAGAGCC 715923 >seq774 Length=1013150 Score = 87.8 bits (96), Expect = 1e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 112104 AAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGAT 112163 ||| || |||||||| |||| ||| || || ||| | | ||| | ||||||||| || || Sbjct 573751 AAGTTCTCTGCTGAGCACTATGTTAATTCTATCTTTTAAAGGACGATTCTTTTCAGGAAT 573692 Query 112164 GGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 |||||||| ||||| |||||||||||| ||| || || || ||| Sbjct 573691 AGAGAACCAGGTCTTCTTACCCATTATCAACACATTTTGTTTACCT 573646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408571201088441