Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq780 96.9 3e-15 seq5 96.9 3e-15 >seq780 Length=1004500 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || || | ||| | || | ||| ||||| ||||| || || || ||||| |||| Sbjct 815152 CCACCCCTGAGACGCAGCACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 815211 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| || | ||||| || ||||| |||| | ||| || || || ||| Sbjct 815212 AGGGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 815271 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||| || || || || || ||| | || | |||||| | || || Sbjct 815272 ATGCCTTCTTTGTCCTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 815331 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || |||| || ||||| || | || || ||||| ||||||||| Sbjct 815332 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 815379 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || || | ||| | || | ||| ||||| ||||| || || || ||||| |||| Sbjct 815380 CCGCCCCTGAGACGCAGCACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 815439 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| || | ||||| || ||||| |||| | ||| || || || ||| Sbjct 815440 AGGGTGCGGCCATCTTCTAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 815499 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||| || || || || || || | || | |||||| | || || Sbjct 815500 ATGCCTTCTTTGTCCTGGATCTTAGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACC 815559 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || |||| || |||||||| | ||| || || || ||||||||| Sbjct 815560 TCGAGGGTGATGGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCATG 815607 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| ||||| || || || ||||| || | | || | | |||| || | ||| Sbjct 815632 TGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCTAGCTGC 815691 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| |||| | ||| || || || |||||||||||||| || || || || Sbjct 815692 TTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATCTTA 815751 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | |||||| | || || || || |||| || |||||||| Sbjct 815752 GCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCGGTC 815811 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | || || || || ||||||||| Sbjct 815812 AGGGTCTTCACGAAGATCTGCATG 815835 >seq5 Length=7401140 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| || || | || | || |||||||| || || || |||||||| |||| Sbjct 630716 CCACCTCTCAAGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGAATATTGTAGTCGGAC 630657 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| || | || || || ||||| || | | ||| || ||||| ||| Sbjct 630656 AGGGTGCGGCCATCTTCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 630597 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||| | || || || || || || | || | |||||| | ||||| Sbjct 630596 ATGCCTTCTGTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACGGGGCTCCACC 630537 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || ||||| || |||||||||| | || || || ||||||||| Sbjct 630536 TCGAGTGTGACGGTCTTGCCGGTTAGGGGCTTCACGAAGATCTGCATG 630489 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| || || | || | || |||||||| || || || |||||||| |||| Sbjct 630944 CCACCTCTCAAGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGAATATTGTAGTCGGAC 630885 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| || | || || || ||||| || | | ||| || ||||| ||| Sbjct 630884 AGGGTGCGGCCATCTTCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 630825 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||| | || || || || || || | || | |||||| | ||||| Sbjct 630824 ATGCCTTCTGTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACGGGGCTCCACC 630765 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || ||||| || |||||||||| | || || || ||||||||| Sbjct 630764 TCGAGTGTGACGGTCTTGCCGGTTAGGGGCTTCACGAAGATCTGCATG 630717 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| || || | || | || |||||||| || || || |||||||| |||| Sbjct 631172 CCACCTCTCAAGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGAATATTGTAGTCGGAC 631113 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| || | || || || ||||| || | | ||| || ||||| ||| Sbjct 631112 AGGGTGCGGCCATCTTCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 631053 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||| | || || || || || || | || | |||||| | ||||| Sbjct 631052 ATGCCTTCTGTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACGGGGCTCCACC 630993 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || ||||| || |||||||||| | || || || ||||||||| Sbjct 630992 TCGAGTGTGACGGTCTTGCCGGTTAGGGGCTTCACGAAGATCTGCATG 630945 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || |||||||| || || || |||||||| |||| | || | | |||| || | || Sbjct 631376 TGCAGGGTAGACTCCTTCTGAATATTGTAGTCGGACAGGGTGCGGCCATCTTCTAGCTGT 631317 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| || | | ||| || ||||| |||||||||||| | || || || || Sbjct 631316 TTCCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCTGTGTCCTGGATCTTG 631257 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | |||||| | ||||| || || ||||| || ||||||||| Sbjct 631256 GCCTTCACGTTCTCGATGGTGTCACGGGGCTCCACCTCGAGTGTGACGGTCTTGCCGGTT 631197 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | | || || || ||||||||| Sbjct 631196 AGGGGCTTCACGAAGATCTGCATG 631173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396233402216169