Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq237 196 9e-45 seq718 107 4e-18 >seq237 Length=2612977 Score = 196 bits (216), Expect = 9e-45 Identities = 171/213 (80%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||||| ||| ||||| |||||||||||||| || || | | || || ||||||| Sbjct 1606856 AGGACCTTCTGCTTGAGCTGGGCCACCTGGTCGCGGAGCAGGCCGGCCGTGCTGGACAGC 1606797 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 || ||||| || | ||| || |||||| |||||||||||||| |||||||| ||||| Sbjct 1606796 CCCGCGTTCTCCGCCTTCAGGCTCTTCACCTTCTCCTCCAGCCGGGCGATGCGCTCCAGC 1606737 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 || | | |||||| |||||||| |||| ||||||||| || | ||| || ||| ||||| Sbjct 1606736 TTCCTCTTGCGGCACTTGGTGGCGGCCAGGCGGTTCCGCAGCCGCTTGCGCTCCACCTTG 1606677 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| |||||||||||||||||||| || ||| Sbjct 1606676 ATGCGCTCCTGGTCCTCCATGTCGATGGGCGAC 1606644 >seq718 Length=1082811 Score = 107 bits (118), Expect = 4e-18 Identities = 124/165 (75%), Gaps = 4/165 (2%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| || || ||||||||||||||||| |||||||||||||||||| ||| Sbjct 692979 GTGTACTCCACTATTTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGG 693038 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| ||| ||| ||||| || |||||||| |||| |||||||| |||| Sbjct 693039 TTGCTCTTCCGGTTACAAGAGTCCTTATACAGCATGTAAGGGGTACCGGTCTCAGTCTGG 693098 Query 213648 GACACCAGTATCTGGC--TCCAGAGGTACCTGGCCTTGACCACCC 213690 ||| | | | |||| |||||| | | ||| || ||||||| Sbjct 693099 GACTCAATGA--TGGCATACCAGAGCTGCTGGGCTTTCACCACCC 693141 Score = 93.3 bits (102), Expect = 8e-14 Identities = 145/203 (71%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 213141 CCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCG 213200 |||||||| ||||| | ||||| ||| | || || || ||||| ||||| |||||| Sbjct 690471 CCTTTGCTGACGGGACAGCCCTCGTATGTCTCATATGGCCCTTGCTCTTTGGCGAGCTCG 690530 Query 213201 CAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTG 213260 ||| |||| || || ||||||| ||||| ||||| |||| | ||| || || | Sbjct 690531 CAGCTGGCCTCCAAAGCGCCGTAGTAAATGGTCTCAAAGATCTGCTGGTTCAGGAGCTGG 690590 Query 213261 GCCTCTGGGGACG-TGAA--GGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGG 213317 ||||| ||||| | || ||| ||| |||| | ||| | || ||||| || || Sbjct 690591 GCCTC--GGGACTCTCAAAGGGGTATC-TCATCAGGATGAAGGCGTCCGCCAGGCCTTGC 690647 Query 213318 ACCCCGATGCCGATGGGTCTGTG 213340 || |||||||||||||| | ||| Sbjct 690648 ACACCGATGCCGATGGGGCGGTG 690670 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 213821 CATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCAC 213880 |||||| || || || | ||| || || ||| |||||||| | | | ||| ||| Sbjct 694194 CATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCCCTAGCTCGCTGCTCCTCCTT 694253 Query 213881 TCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTA 213940 || | ||| || || ||| ||||| |||||||||||| |||||||||||||| ||| Sbjct 694254 CCCGGTGTTCTTCTTCAAATCGAGAAACTCAAAGATGTCCAAGTGCCACGGCTCCAGGTA 694313 Query 213941 GATGGCAAAGGCGCCCGGCCTCT 213963 ||||||||||| || || |||| Sbjct 694314 AATGGCAAAGGCCCCAGGTCTCT 694336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931424311361280