Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq124 102 5e-16 seq861 89.7 3e-12 >seq124 Length=3518557 Score = 102 bits (112), Expect = 5e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 || ||| |||| || | ||||| ||||| || || ||||| || || || || || || Sbjct 2050385 GTTACTAATGCTGTGGTCACTGTACCAGCCTACTTCAATGACTCCCAGCGCCAGGCCACA 2050326 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCA 474847 |||||||| || | ||||||||||| || || | || || || |||||||||||||| Sbjct 2050325 AAAGATGCTGGTACTATTGCAGGTCTCAACGTGCTCCGAATCATCAATGAACCAACAGCT 2050266 Query 474848 GCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || || ||||||||||| | || || || Sbjct 2050265 GCTGCTATTGCTTATGGTTTAGACAAAAA 2050237 Score = 89.7 bits (98), Expect = 3e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091 |||||| || ||| | || ||||| || ||| || || | ||| | || || Sbjct 2048543 TGAAGGGGAGAGAGCCATGACAAAAGACAACAACTTGCTGGGCAAGTTTGAACTGACTGG 2048484 Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151 || || || ||||| ||||| || ||||| |||||||| ||||||||||||||||| || Sbjct 2048483 CATCCCCCCAGCTCCTAGAGGCGTACCTCAGATTGAAGTCACTTTTGATATTGATGCCAA 2048424 Query 476152 TGGTATTCTTAATGTTACTGCT 476173 ||| || |||||||| ||||| Sbjct 2048423 TGGCATCCTTAATGTGTCTGCT 2048402 >seq861 Length=860652 Score = 89.7 bits (98), Expect = 3e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 627769 CCATCACGTCCTGCTCTACCTATTTCTTGATAATAACCTTCGATATTTTTAGGTGCGCCA 627828 |||||||| || ||||| || ||||||||||| || ||| || | ||||| || ||| Sbjct 702618 CCATCACGGCCAGCTCTTCCAATTTCTTGATAGTATGATTCCATTTCCTTAGGGGCTCCA 702559 Query 627829 TAATGTATTACTGCTCTCACATCTGATTTATTAATACCCATTCCAAATGCAATTGTTGCA 627888 ||||| || ||| | | ||||| |||||| |||||||||||||| || | || ||| Sbjct 702558 TAATGAATAACTCTCCGGATATCTGCTTTATTGATACCCATTCCAAAAGCCACAGTAGCA 702499 Query 627889 AC 627890 || Sbjct 702498 AC 702497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267779548663916