Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq997 161 1e-34 seq116 143 3e-29 >seq997 Length=681529 Score = 161 bits (178), Expect = 1e-34 Identities = 636/997 (64%), Gaps = 5/997 (1%) Strand=Plus/Minus Query 160037 CAGCGATCTGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTC 160096 ||| | | ||| || || || ||| || | ||| || | || || |||||| ||| Sbjct 24108 CAGAGCTTTGTCTCTCAAATATTCTTCTAAACACTGAATTGCAAAAGGGTCAACATCTGT 24049 Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156 ||| ||||| || || || | ||||| ||| | |||| || | || || Sbjct 24048 GTCAAATTTGTTAGCAAAGAAGTGGTGT---TTCCACAACATCCCGTTTAAATCCCCCAC 23992 Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216 ||| ||||| || || ||||| | || | || | ||| || || || |||| || || Sbjct 23991 CCCAAACACACACACAGAACGGACATGAATTCCATGGCATGGTGGATAGGGAGCACCGTT 23932 Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276 || || |||||| ||||||||||||||||||| ||||| | || | |||||| || Sbjct 23931 AAATACATCCCCTTCGAAGTACTGCCACTTCACAAATCTGGCAAGGGCATTCATGTCAGA 23872 Query 160277 GGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGT 160336 || || || | | | ||| ||||| ||||| | || || | || | || Sbjct 23871 AACATCATACTTATTGCTGGAAGAAACTGCACCTGGAACTTCCGGGATTCTTTGAATAGT 23812 Query 160337 GGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGAT 160396 ||||||| || ||| || ||||| || || || |||| |||||| || || | ||| Sbjct 23811 AGCCCACAAGTATTCATCAGGGCTATATGTATCTTTAGCCCATTCAATAAATTTAAGGAT 23752 Query 160397 TAACCTGTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCC 160456 | |||| | || | | || | || | || ||||| || || ||||| Sbjct 23751 TTTGCTGTTTTCTAACACATACGCTACAAATCTCCTACTAACAACAAAATAGGCACTGCC 23692 Query 160457 GGAGAATATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCAC 160516 || || || ||| | | ||| || | |||||| ||| ||||| || | Sbjct 23691 AGAAAAAATAGGTGTACTAAGAGGTGGTAGTTTTTTGTCTACACCCGTGTTTTTCAGCTT 23632 Query 160517 TCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTC 160576 ||| | || | | | | || ||||| | || |||| || ||||| || Sbjct 23631 TCCGTCAACAATTTCATAATGGTTTTTCCATCGTACTTCTTTGTTTGGAGGCATTTTCTC 23572 Query 160577 CGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGT 160636 || |||| |||||| |||| | | | ||||| | || || || || || || Sbjct 23571 AGTTTCTAAACTGTTTTCACCCTTTAAAGCTTTCAATTTCTCTACAATTTCCTCATTGGT 23512 Query 160637 CTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTC 160696 || | |||||||| | || || | ||||||| || |||||||| | || Sbjct 23511 TTTAATGGGAAAGTCCATGCCACAAAGATTTATCAAATATTTCCATTTTGTATTCCTCCT 23452 Query 160697 GTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTAC 160756 || ||||| ||||||| |||| ||||| || || | |||||| || || |||||||| Sbjct 23451 GTAGAGGTCTTTCATGCAGTTAAGGTCTGCTTGTACCCTGCTCCATGATGCATACACTAC 23392 Query 160757 GTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGC 160816 | || || ||||| | |||||| ||||| ||||| || | |||||| ||| | Sbjct 23391 ACTTTCCGTTTGGCTGGCAATAAAGACATTATCAAAACATGATGCAATTCCCTTCACTG- 23333 Query 160817 CAGAAAGAACATCTT-ATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCG 160875 ||| ||| | || | | |||| |||||| || | ||| || |||||| | | Sbjct 23332 CAGCCAGATAAGATTCAGGAGACTTTTTGTCCACATGAATGCAGTAGTAATTCTGATGAG 23273 Query 160876 CGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGT 160935 ||||| | ||| || | ||||| ||||| || || || |||| | ||| || || | Sbjct 23272 TATAGATTGACCTTAGAAGTCTCTCAAACATATCAATTTTGTGATAAACCACTATTGAAT 23213 Query 160936 AGGCTATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCT 160995 |||| || ||||| || | || || || |||| | | | ||||| ||| || Sbjct 23212 AGGCAATAGGAAATTCAGCTTCTTCTTTGCTGAGGGGTTCCATAATATACTTCCGCATCC 23153 Query 160996 TGATAAAATAATCACAATCCCGCGTCATGTTGATATA 161032 |||| || || ||||| ||||| || ||||| Sbjct 23152 TGATGAAGGAAGTGCAATCTGTTGTCATATTAATATA 23116 >seq116 Length=3595629 Score = 143 bits (158), Expect = 3e-29 Identities = 239/345 (69%), Gaps = 8/345 (2%) Strand=Plus/Minus Query 160620 ACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTC 160679 |||||||| ||| |||||||| || |||||||| ||||| ||| | || ||| | Sbjct 2217491 ACGATCTCGGCGTTGGTCTTGAGGGGGAAGTCGGTGCCGCAGGTGTTGAGCAGGTAGCGC 2217432 Query 160680 CATTTCGCGCTCAGGTCGT----GCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCG 160735 || | |||| || || |||||||| |||||| || | || ||||||| ||| Sbjct 2217431 CA----GGGCTCGGGCCGGCGCAGCAGGTCCTCCATGCAGTTGAGGTCGGCCTGCAGGCG 2217376 Query 160736 GCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACA 160795 |||||| ||||| || |||| ||| || |||||||| |||||||| ||| || Sbjct 2217375 CGACCAGGACGCGTAGACGACGTGCTCCAGCCGGCTGGCCACGAAGACGTTGGGGAAGCA 2217316 Query 160796 CGACACGATTCCCACCACCGCCAGAAAGAACATCTTATCCGCCTTTCGGTCCACGTGCAC 160855 | | | | ||| ||| | | ||| |||||| |||||||||||| Sbjct 2217315 GGCGGCCAGGGCGCGCACGGCCTGCAGGAAGGCGGCGGGCGCCTTGGCGTCCACGTGCAC 2217256 Query 160856 GCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTT 160915 ||| ||||||||||| |||||||| | ||||| ||||| | |||||||| ||| | || Sbjct 2217255 GCAGTACAGGTTCTGCGGCGCGTACAGGGCCCGCAGCAAGCGCTCGAACAGCTCCAGCTG 2217196 Query 160916 ATGATGGATCACGATAGAGTAGGCTATCGGAAACTCGGTCTCCTC 160960 | ||||| || || ||| |||| | ||| || | | |||||| Sbjct 2217195 GTCGTGGATGACCATGGAGAAGGCGAGCGGGAAGGCCGCCTCCTC 2217151 Score = 104 bits (114), Expect = 3e-17 Identities = 219/326 (67%), Gaps = 3/326 (1%) Strand=Plus/Minus Query 160046 GTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTT 160105 ||| ||||| || || ||||| || || || || | |||| || ||| || || Sbjct 2218068 GTGGCGCAGGTGCTCCTCCAGGCACTGCACCGCCTGCTCGTCCACACTCAGGTCAAACTT 2218009 Query 160106 ATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACAC 160165 || || | ||| || || | ||| || |||||| ||| ||| || ||| | | Sbjct 2218008 GTTGGCCAGCAGGTGCTGC---TGCTGGAGCATCCAGGGCAGGTCCCCCAGGCCGTAGAT 2217952 Query 160166 GCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTC 160225 ||||| || || |||| |||| |||| |||||||| | || || | | ||| Sbjct 2217951 GCAGATGGCGCGGCGGTGCGTGCCGGTGCAGGGCGGGTAGGGTGCCCCCCGCTGTATGTC 2217892 Query 160226 ACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTA 160285 || || ||| |||||||| || || | || | | | |||||| || ||||| Sbjct 2217891 GCCCTCCAGGTAGTGCCACTTGACTAAGCGCGCCAGGGAGTTCATGTCAGACAGCTCGTA 2217832 Query 160286 TTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAG 160345 |||| | | || | ||| || || ||||| |||| ||||| || |||||||||| Sbjct 2217831 CTTGTCGTTGGGTGGCAAGGCGCCCGGCACGCCTGGCAGGCGCTGCAGCGTGGCCCACAC 2217772 Query 160346 GTGTTCGTCGGGGCTGTACGTGTCCT 160371 ||| |||||||||||||| ||||||| Sbjct 2217771 GTGCTCGTCGGGGCTGTATGTGTCCT 2217746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577151975608920