Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq718 91.5 2e-13 seq178 86.0 7e-12 >seq718 Length=1082811 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 75896 TCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGT 75955 || ||||| ||||| || || || || ||||| || ||||| |||||||| |||||| Sbjct 693100 TCCCAGACTGAGACCGGTACCCCTTACATGCTGTATAAGGACTCTTGTAACCGGAAGAGC 693041 Query 75956 AACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTAC 76015 ||||| |||| |||| || |||||| || || || ||||||||||| | |||||| Sbjct 693040 AACCAGCAGAACCTGGGCACCATCAAGTGCAGCAACCTGTGCACGGAAATAGTGGAGTAC 692981 Query 76016 ACAGATAAGGATGAG 76030 || || |||||| Sbjct 692980 ACCAGCAAAGATGAG 692966 >seq178 Length=3009335 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 65441 AGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGA 65500 |||||||||||||||||||||| |||||| ||||| || ||||| ||||||||||| | Sbjct 618178 AGAATCCATTTGACTTTATGGAGAACATTTCACTTGAAGGCAAGACAAACTTCTTTGAAA 618237 Query 65501 AGCGAGTTGGGGACTAT 65517 || |||| || || ||| Sbjct 618238 AGAGAGTAGGAGAATAT 618254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596500122012960