Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq124 212 8e-50 seq5 168 9e-37 seq780 159 5e-34 seq41 104 3e-17 >seq124 Length=3518557 Score = 212 bits (234), Expect = 8e-50 Identities = 378/545 (69%), Gaps = 10/545 (2%) Strand=Plus/Minus Query 195865 AAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGA 195924 |||||| ||||||||||| || |||||||| || || ||||| || |||||| ||||| Sbjct 2050098 AAATGTTTTGATCTTTGACCTGGGTGGTGGCACTTTCGATGTGTCTATTCTCACAATTGA 2050039 Query 195925 AGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTT 195984 || |||||| || ||||| ||| | ||||| || ||||| || || ||||| ||||| || Sbjct 2050038 AGATGGTATCTTTGAAGTGAAGTCCACTGCAGGCGATACCCACCTGGGTGGAGAAGACTT 2049979 Query 195985 CGATGCACGTCTTCTCCGTCATTTGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATAT 196044 ||| | | || || || || ||| ||| || ||| | |||||||| || Sbjct 2049978 TGATAACAGAATGGTCAACCACTTCATTGCTGAATTCAAACGCAAGCACAAGAAAGACAT 2049919 Query 196045 TTCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAAC 196104 || ||| || || |||| || ||| | || |||||||||||||| || || || Sbjct 2049918 CAGTGAAAACAAGAGAGCAGTTCGCCGTCTTCGCACAGCATGTGAACGTGCAAAGCGTAC 2049859 Query 196105 TCTCTCTTCTACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTT 196164 ||||| || | | || | | ||||||||||||| | | ||| || |||||||| Sbjct 2049858 CCTCTCCTCCAGCACGCAGGCCAGTATTGAGATTGATTCTCTCTATGAGGGCATTGACTT 2049799 Query 196165 CTATACAACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTT---TAGGAA 196221 ||| || | || || || || || ||||||||||| || ||||| |||| | | | Sbjct 2049798 CTACACCTCAATCACACGAGCTCGCTTTGAAGAGTTGAATGCTGATCTGTTCCGTGGTAC 2049739 Query 196222 GTGTATGGAACCTGTTGAACAAGTACTT-CGTGACGCAAAGATGGATAAGTCTAAGGTTG 196280 | |||| || | || | ||| ||| || || || ||| | || || || || | Sbjct 2049738 G---CTGGACCCCG-TGGAGAAGGCCTTGCGGGATGCCAAGCTCGACAAATCCCAGATCC 2049683 Query 196281 ATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTA 196340 | || || || | || || || || || || || || ||||||| | | | | | | | Sbjct 2049682 ACGACATAGTATTGGTTGGTGGGTCCACTCGCATCCCAAAGATTC-AGAAACTCCTACAA 2049624 Query 196341 G-CTTCTTCAATAATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTAT 196399 | |||||||||| ||||| | ||||| | ||||| || |||||||| || ||||| Sbjct 2049623 GACTTCTTCAATGGCAAAGAACTGAACAAGAGCATCAATCCTGATGAAGCTGTAGCTTAC 2049564 Query 196400 GGTGC 196404 ||||| Sbjct 2049563 GGTGC 2049559 Score = 131 bits (144), Expect = 2e-25 Identities = 114/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 195708 ATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACG 195767 |||| || || |||||||| || ||||||| ||| || || || ||||| ||||| || | Sbjct 2050378 ATGCTGTGGTCACTGTACCAGCCTACTTCAATGACTCCCAGCGCCAGGCCACAAAAGATG 2050319 Query 195768 CTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAA 195827 ||| | ||||||| ||||| ||| || |||| ||||||||||||||||| ||||| | Sbjct 2050318 CTGGTACTATTGCAGGTCTCAACGTGCTCCGAATCATCAATGAACCAACAGCTGCTGCTA 2050259 Query 195828 TTGCTTATGGTCTGGACAAGAA 195849 ||||||||||| | ||||| || Sbjct 2050258 TTGCTTATGGTTTAGACAAAAA 2050237 >seq5 Length=7401140 Score = 168 bits (186), Expect = 9e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| |||| || || || || |||| |||||||| ||| | Sbjct 631174 ATGCAGATCTTCGTGAAGCCCCTAACCGGCAAGACCGTCACACTCGAGGTGGAGCCCCGT 631233 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| | || |||||||| || || | ||||||||||| ||||| ||| Sbjct 631234 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACACAGAAGGCATTCCCCCCGACCAG 631293 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || |||||||| |||||||| |||||||| || ||||| | || ||||| Sbjct 631294 CAGAGGCTCATCTTTGCTGGGAAACAGCTAGAAGATGGCCGCACCCTGTCCGACTACAAT 631353 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 |||| ||||||||||| || ||||| || || | || |||||||| Sbjct 631354 ATTCAGAAGGAGTCTACCCTGCACCTGGTGCTGCGCCTGAGGGGTGGT 631401 Score = 161 bits (178), Expect = 1e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| |||| || || || || |||| |||||||| ||| | Sbjct 630490 ATGCAGATCTTCGTGAAGCCCCTAACCGGCAAGACCGTCACACTCGAGGTGGAGCCCCGT 630549 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| | || |||||||| || || | ||||||||||| ||||| ||| Sbjct 630550 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACACAGAAGGCATTCCCCCCGACCAG 630609 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || |||||||| |||||||| |||||||| || ||||| | || ||||| Sbjct 630610 CAGAGGCTCATCTTTGCTGGGAAACAGCTAGAAGATGGCCGCACCCTGTCCGACTACAAT 630669 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 |||| ||||||||||| || ||||| || || Sbjct 630670 ATTCAGAAGGAGTCTACCCTGCACCTGGTGCT 630701 Score = 161 bits (178), Expect = 1e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| |||| || || || || |||| |||||||| ||| | Sbjct 630718 ATGCAGATCTTCGTGAAGCCCCTAACCGGCAAGACCGTCACACTCGAGGTGGAGCCCCGT 630777 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| | || |||||||| || || | ||||||||||| ||||| ||| Sbjct 630778 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACACAGAAGGCATTCCCCCCGACCAG 630837 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || |||||||| |||||||| |||||||| || ||||| | || ||||| Sbjct 630838 CAGAGGCTCATCTTTGCTGGGAAACAGCTAGAAGATGGCCGCACCCTGTCCGACTACAAT 630897 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 |||| ||||||||||| || ||||| || || Sbjct 630898 ATTCAGAAGGAGTCTACCCTGCACCTGGTGCT 630929 Score = 161 bits (178), Expect = 1e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| |||| || || || || |||| |||||||| ||| | Sbjct 630946 ATGCAGATCTTCGTGAAGCCCCTAACCGGCAAGACCGTCACACTCGAGGTGGAGCCCCGT 631005 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| | || |||||||| || || | ||||||||||| ||||| ||| Sbjct 631006 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACACAGAAGGCATTCCCCCCGACCAG 631065 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || |||||||| |||||||| |||||||| || ||||| | || ||||| Sbjct 631066 CAGAGGCTCATCTTTGCTGGGAAACAGCTAGAAGATGGCCGCACCCTGTCCGACTACAAT 631125 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 |||| ||||||||||| || ||||| || || Sbjct 631126 ATTCAGAAGGAGTCTACCCTGCACCTGGTGCT 631157 >seq780 Length=1004500 Score = 159 bits (176), Expect = 5e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| ||||| ||||| || || |||||||||||||||||| | Sbjct 815378 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 815319 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || | || || ||||| || || || ||||||||||| || || ||| Sbjct 815318 GACACCATTGAGAATGTGAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 815259 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || ||||| || || ||||| |||||||| || ||||| | || |||||| Sbjct 815258 CAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTGTCCGACTACAAC 815199 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 | || ||||| || || || || || || || | || |||||||| Sbjct 815198 ATCCAGAAGGAATCCACCCTGCATCTGGTGCTGCGTCTCAGGGGTGGT 815151 Score = 152 bits (168), Expect = 7e-32 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| ||||| || || || || |||||||||||||||||| | Sbjct 815834 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 815775 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || | || || ||||| || || || ||||||||||| || || ||| Sbjct 815774 GACACCATTGAGAATGTGAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 815715 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || ||||| || || ||||| |||||||| || ||||| |||| |||||| Sbjct 815714 CAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTGTCTGACTACAAC 815655 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 | || ||||| || || || ||||| || || Sbjct 815654 ATCCAGAAGGAATCCACCCTGCACCTGGTGCT 815623 Score = 149 bits (164), Expect = 8e-31 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| || || || || || || |||||||||||||||||| | Sbjct 815606 ATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 815547 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| | || || ||||| || || || ||||||||||| || || ||| Sbjct 815546 GACACCATTGAGAACGTGAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 815487 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || |||||||| || ||||| |||||||| || ||||| | || |||||| Sbjct 815486 CAGAGGCTGATCTTTGCTGGCAAGCAGCTAGAAGATGGCCGCACCCTGTCCGACTACAAC 815427 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 | || ||||| || || || || || || || Sbjct 815426 ATCCAGAAGGAATCCACCCTGCATCTGGTGCT 815395 >seq41 Length=4869164 Score = 104 bits (114), Expect = 3e-17 Identities = 158/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 196635 CAAAGGATAACCATCTACTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAG 196694 |||||||||||||||| || || |||||||| ||||| || || || |||| || | | Sbjct 3478293 CAAAGGATAACCATCTCCTGGGCACTTTCGACTTGACTGGAATCCCTCCTGCCCCTCGTG 3478234 Query 196695 GTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAG 196754 |||| || |||||| | ||| ||| || ||||| | |||||||| || || || | Sbjct 3478233 GTGTGCCGCAGATTGAAGTTACCTTTGAGATAGATGTGAATGGAATCCTCCGTGTTACGG 3478174 Query 196755 CTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGC 196814 |||| ||||||| | |||| || | ||||| ||||||||||| || || | Sbjct 3478173 CTGAAGACAAGGGTACTGGAAACAAAAACAAGATCACAATTACCAATGATCAGAACCGTC 3478114 Query 196815 TTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCGGAAAAGT 196859 | | || || ||||| | |||||| ||||| || |||| Sbjct 3478113 TGACCCCAGAAGAGATTGAGAGAATGGTTACGGATGCTGAGAAGT 3478069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657785783700240