Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq178 84.2 4e-11 >seq178 Length=3009335 Score = 84.2 bits (92), Expect = 4e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 39168 TCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCA 39227 |||||| |||||| | ||| |||||||||||||| || || | |||||| || |||||| Sbjct 616888 TCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTCAACCAAAAAATGGATGCA 616829 Query 39228 AAACTACTAGAAAAGAATATACCCTCCACACACGCAAATGCTATTA 39273 ||| | ||||||||| || || ||||| ||||| |||| || Sbjct 616828 AAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGCTACTA 616783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905030585598600