Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq4 152 6e-31 seq270 149 8e-30 seq1233 136 5e-26 seq844 107 2e-17 seq99 105 8e-17 seq1594 86.0 8e-11 >seq4 Length=7559895 Score = 152 bits (168), Expect = 6e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||| ||||| || ||||||||||| |||| || Sbjct 2322364 GCTTGGCCAGCTCCCCGGGCAGCAGCAGCCGCACAGCCGTCTGGATCTCCCGCGACGTGA 2322423 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| ||| |||||| | ||||||| |||| | Sbjct 2322424 TGGTCGAGCGCTTGTTATAGTGCGCCAGGCGGGACGCCTCGCCGGCGATGCGCTCGAAGA 2322483 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||| | |||| |||||||| |||||||| Sbjct 2322484 TGTCGTTCACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCGGGGT 2322543 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 2322544 GCACCTGCTTCAGCACCTTGTA 2322565 Score = 152 bits (168), Expect = 6e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||| ||||| || ||||||||||| |||| || Sbjct 2379910 GCTTGGCCAGCTCCCCGGGCAGCAGCAGCCGCACAGCCGTCTGGATCTCCCGCGACGTGA 2379851 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| ||| |||||| | ||||||| |||| | Sbjct 2379850 TGGTCGAGCGCTTGTTATAGTGCGCCAGGCGGGACGCCTCGCCGGCGATGCGCTCGAAGA 2379791 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||| | |||| |||||||| |||||||| Sbjct 2379790 TGTCGTTCACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCGGGGT 2379731 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 2379730 GCACCTGCTTCAGCACCTTGTA 2379709 Score = 152 bits (168), Expect = 6e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||| ||||| || ||||||||||| |||| || Sbjct 2386763 GCTTGGCCAGCTCCCCGGGCAGCAGCAGCCGCACAGCCGTCTGGATCTCCCGCGACGTGA 2386704 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| ||| |||||| | ||||||| |||| | Sbjct 2386703 TGGTCGAGCGCTTGTTATAGTGCGCCAGGCGGGACGCCTCGCCGGCGATGCGCTCGAAGA 2386644 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||| | |||| |||||||| |||||||| Sbjct 2386643 TGTCGTTCACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCGGGGT 2386584 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 2386583 GCACCTGCTTCAGCACCTTGTA 2386562 Score = 149 bits (164), Expect = 8e-30 Identities = 154/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||| ||||| || ||||||||||| |||| || Sbjct 2333729 GCTTGGCCAGCTCCCCGGGCAGCAGCAGCCGCACAGCCGTCTGGATCTCCCGCGACGTGA 2333788 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| ||| |||||| | ||||||| |||| | Sbjct 2333789 TGGTCGAGCGCTTGTTATAGTGCGCCAGGCGGGACGCCTCGCCGGCGATGCGCTCGAAGA 2333848 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||| | |||| |||||||| |||||| | Sbjct 2333849 TGTCGTTCACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCGGGAT 2333908 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 2333909 GCACCTGCTTCAGCACCTTGTA 2333930 >seq270 Length=2473950 Score = 149 bits (164), Expect = 8e-30 Identities = 154/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||||||||||||||| || | || Sbjct 1574281 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCGGTCTGGATCTCCCGGGACGTGA 1574340 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| ||| ||||| | ||||||| |||| | Sbjct 1574341 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGGGACGCCTCCCCGGCGATGCGCTCGAAGA 1574400 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||| | ||| |||||||| ||| |||| Sbjct 1574401 TGTCGTTCACGAAGGAGTTCATGATGCCCATGGCTTTGGACGAGATGCCGGTGTCCGGGT 1574460 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 1574461 GCACCTGCTTCAGCACCTTGTA 1574482 Score = 149 bits (164), Expect = 8e-30 Identities = 154/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||||||||||||||| || | || Sbjct 1593183 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCGGTCTGGATCTCCCGGGACGTGA 1593242 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| ||| ||||| | ||||||| |||| | Sbjct 1593243 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGGGACGCCTCCCCGGCGATGCGCTCGAAGA 1593302 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||| | ||| |||||||| ||| |||| Sbjct 1593303 TGTCGTTCACGAAGGAGTTCATGATGCCCATGGCTTTGGACGAGATGCCGGTGTCCGGGT 1593362 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 1593363 GCACCTGCTTCAGCACCTTGTA 1593384 Score = 143 bits (158), Expect = 3e-28 Identities = 153/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||||||||||||||| || | || Sbjct 1448402 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCGGTCTGGATCTCCCGGGACGTGA 1448343 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| ||| ||||| | ||||||| |||| | Sbjct 1448342 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGGGACGCCTCCCCGGCGATGCGCTCGAAGA 1448283 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||| | ||| || ||||| ||| |||| Sbjct 1448282 TGTCGTTCACGAAGGAGTTCATGATGCCCATGGCTTTGGACGAAATGCCGGTGTCCGGGT 1448223 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 1448222 GCACCTGCTTCAGCACCTTGTA 1448201 Score = 143 bits (158), Expect = 3e-28 Identities = 153/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||||||||||||||| || | || Sbjct 1613562 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCGGTCTGGATCTCCCGGGACGTGA 1613621 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| ||| ||||| | ||||||| |||| | Sbjct 1613622 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGGGACGCCTCCCCGGCGATGCGCTCGAAGA 1613681 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||| | ||| || ||||| ||| |||| Sbjct 1613682 TGTCGTTCACGAAGGAGTTCATGATGCCCATGGCTTTGGACGAAATGCCGGTGTCCGGGT 1613741 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 1613742 GCACCTGCTTCAGCACCTTGTA 1613763 Score = 143 bits (158), Expect = 3e-28 Identities = 153/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||||||||||||||| || | || Sbjct 1631564 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCGGTCTGGATCTCCCGGGACGTGA 1631505 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| ||| ||||| | ||||||| |||| | Sbjct 1631504 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGGGACGCCTCCCCGGCGATGCGCTCGAAAA 1631445 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||| | ||| || ||||| ||| |||| Sbjct 1631444 TGTCGTTCACGAAGGAGTTCATGATGCCCATGGCTTTGGACGAAATGCCGGTGTCCGGGT 1631385 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 1631384 GCACCTGCTTCAGCACCTTGTA 1631363 Score = 140 bits (154), Expect = 4e-27 Identities = 152/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||||||||||||||| || | || Sbjct 1487346 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCGGTCTGGATCTCCCGGGACGTGA 1487405 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| ||| ||||| | ||||||| |||| | Sbjct 1487406 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGGGACGCCTCCCCGGCGATGCGCTCGAAGA 1487465 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||| | ||| || ||||| ||| |||| Sbjct 1487466 TGTCGTTCACGAAGGAGTTCATGATGCCCATGGCTTTGGACGAAATGCCGGTGTCCGGGT 1487525 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||| ||||| Sbjct 1487526 GCACCTGCTTCAGCACTTTGTA 1487547 Score = 140 bits (154), Expect = 4e-27 Identities = 152/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||||||||||||||| || | || Sbjct 1499954 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCGGTCTGGATCTCCCGGGACGTGA 1500013 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| ||| ||||| | ||||||| |||| | Sbjct 1500014 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGGGACGCCTCCCCGGCGATGCGCTCGAAGA 1500073 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||| | ||| || ||||| ||| |||| Sbjct 1500074 TGTCGTTCACGAAGGAGTTCATGATGCCCATGGCTTTGGACGAAATGCCGGTGTCCGGGT 1500133 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 1500134 GAACCTGCTTCAGCACCTTGTA 1500155 >seq1233 Length=419359 Score = 136 bits (150), Expect = 5e-26 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||| | |||||| || || Sbjct 351749 GCTTGGCCAGCTCTCCGGGCAGCAGCAGGCGCACGGCCGTCTGCACCTCGCGGCTGGTGA 351808 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||||||| | |||||||| || | |||||| || ||||||| |||| || Sbjct 351809 TGGTGGTGCGCTTGTTGTACTGCGCCAGGCGCGCCGCCTCGCTGGCGATGCGCTCGAACA 351868 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||| || || |||||||||| ||| | ||| |||||| ||| ||| |||| Sbjct 351869 CATCGTTCACGAAGGAGTTCATGATGCTCATGGCCTTCGAGGAGATCCCCGTGTCCGGGT 351928 Query 1254523 GCACCTGC 1254530 |||||||| Sbjct 351929 GCACCTGC 351936 >seq844 Length=884573 Score = 107 bits (118), Expect = 2e-17 Identities = 145/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | || |||||||| ||||| || || || | || Sbjct 773359 GCTTGGCCAGCTCCCCTGGCAGCAGTAGACGCACGGCTGTCTGAATTTCCCGGGAAGTGA 773300 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | || |||||||| |||||| | | ||||| || | | Sbjct 773299 TGGTTGAGCGCTTGTTGTAATGTGCCAGACGAGAGGCCTCCCCGGCAATGCGCTCAAAAA 773240 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| |||||||| |||||||||| ||| | |||| ||||| || |||||| | Sbjct 773239 TGTCATTGACAAAGGAGTTCATGATGCCCATGGCCTTGGAAGAGATTCCGGTGTCGGGAT 773180 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 773179 GAACCTGCTTCAGCACCTTGTA 773158 >seq99 Length=3819408 Score = 105 bits (116), Expect = 8e-17 Identities = 141/195 (72%), Gaps = 1/195 (1%) Strand=Plus/Minus Query 1852372 CTGGTACTCGGTGCCGCGCACAAACTCGAGTCCGCCCAGCGGCACGCCGATGTGCTGGAG 1852431 |||| | |||||||| ||||| || ||| | | || |||||||| ||| || || Sbjct 3145575 CTGGAAGTCGGTGCCCCGCACGAAGGTGAGCTTGTCGAGGGGCACGCCAATGCTCTCCAG 3145516 Query 1852432 CATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGTGTTCGACCAGGTCCCACGGCGT 1852491 |||||||||||| | |||||| ||||| || | || | ||| |||||||||| Sbjct 3145515 CATGGCCTTGATCACGGCCTCGTAGTAGCGGGTGCGCAGCTCCAGCAGCTCCCACGGCGC 3145456 Query 1852492 CTTGCCGTTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCTTGACCCGACAGCCGGC 1852551 ||| |||||| |||| |||||| | |||||| |||||||| ||||| | | || || Sbjct 3145455 CTTCATGTTGTCCAGGTAGGCGTGGAGGTCGGCGAAGAGGATGGTGACCTGGC-GCGGGG 3145397 Query 1852552 CTGGAGAAAGTCGGC 1852566 | |||| || |||| Sbjct 3145396 CGGGAGGGAGCCGGC 3145382 >seq1594 Length=153964 Score = 86.0 bits (94), Expect = 8e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 507105 AGCGGTTCAAGGGCAAGGAGGGTAGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAACT 507164 ||||| | ||||| |||||||| | | || || || ||||||||||||||| ||| Sbjct 126522 AGCGGCTGAAGGGGAAGGAGGGCCGTGTGCGTGGGAACCTCATGGGCAAGCGCGTGGACT 126581 Query 507165 TTACCGCGCGCGCCGTCATCAGCCCCGACCCCGAGATCGACATTGACGAGGTGGGCGTGC 507224 | | || ||| ||||||||| ||||||||| | | ||||||| |||||||||| | Sbjct 126582 TCTCGGCCCGCACCGTCATCACACCCGACCCCAACCTGAGCATTGACCAGGTGGGCGTTC 126641 Query 507225 CC 507226 || Sbjct 126642 CC 126643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106374603348489