Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq780 118 1e-21 seq5 109 5e-19 >seq780 Length=1004500 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || ||||| || || ||| Sbjct 815834 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 815775 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||||||||| || || || || || Sbjct 815774 GACACCATTGAGAATGTGAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 815715 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||||| || ||||| || ||| | | | |||| || || ||| Sbjct 815714 CAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTGTCTGACTACAAC 815655 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || |||||||| || || ||| ||||| |||| Sbjct 815654 ATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCG 815620 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || ||||| || || ||| Sbjct 815378 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 815319 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||||||||| || || || || || Sbjct 815318 GACACCATTGAGAATGTGAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 815259 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||||| || ||||| || ||| | | | |||| || || ||| Sbjct 815258 CAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTGTCCGACTACAAC 815199 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || |||||||| || || || ||||| |||| Sbjct 815198 ATCCAGAAGGAATCCACCCTGCATCTGGTGCTGCG 815164 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || ||||| || || ||| Sbjct 815606 ATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 815547 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||||||||| || || || || || Sbjct 815546 GACACCATTGAGAACGTGAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 815487 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || ||||| || ||| | | | |||| || || ||| Sbjct 815486 CAGAGGCTGATCTTTGCTGGCAAGCAGCTAGAAGATGGCCGCACCCTGTCCGACTACAAC 815427 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || |||||||| || || || ||||| |||| Sbjct 815426 ATCCAGAAGGAATCCACCCTGCATCTGGTGCTGCG 815392 >seq5 Length=7401140 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || | |||||||| || || | || ||||| || || || Sbjct 630490 ATGCAGATCTTCGTGAAGCCCCTAACCGGCAAGACCGTCACACTCGAGGTGGAGCCCCGT 630549 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| |||| |||||| || || ||||| || Sbjct 630550 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACACAGAAGGCATTCCCCCCGACCAG 630609 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | |||||||| ||||||||||| || ||| | | | |||| || || || Sbjct 630610 CAGAGGCTCATCTTTGCTGGGAAACAGCTAGAAGATGGCCGCACCCTGTCCGACTACAAT 630669 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| || || || ||| ||||| |||| ||| | || ||| Sbjct 630670 ATTCAGAAGGAGTCTACCCTGCACCTGGTGCTGCGCTTGAGAGGTGGC 630717 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || | |||||||| || || | || ||||| || || || Sbjct 630718 ATGCAGATCTTCGTGAAGCCCCTAACCGGCAAGACCGTCACACTCGAGGTGGAGCCCCGT 630777 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| |||| |||||| || || ||||| || Sbjct 630778 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACACAGAAGGCATTCCCCCCGACCAG 630837 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | |||||||| ||||||||||| || ||| | | | |||| || || || Sbjct 630838 CAGAGGCTCATCTTTGCTGGGAAACAGCTAGAAGATGGCCGCACCCTGTCCGACTACAAT 630897 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| || || || ||| ||||| |||| ||| | || ||| Sbjct 630898 ATTCAGAAGGAGTCTACCCTGCACCTGGTGCTGCGCTTGAGAGGTGGC 630945 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || | |||||||| || || | || ||||| || || || Sbjct 630946 ATGCAGATCTTCGTGAAGCCCCTAACCGGCAAGACCGTCACACTCGAGGTGGAGCCCCGT 631005 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| |||| |||||| || || ||||| || Sbjct 631006 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACACAGAAGGCATTCCCCCCGACCAG 631065 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | |||||||| ||||||||||| || ||| | | | |||| || || || Sbjct 631066 CAGAGGCTCATCTTTGCTGGGAAACAGCTAGAAGATGGCCGCACCCTGTCCGACTACAAT 631125 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| || || || ||| ||||| |||| ||| | || ||| Sbjct 631126 ATTCAGAAGGAGTCTACCCTGCACCTGGTGCTGCGCTTGAGAGGTGGC 631173 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || || || || || ||| Sbjct 630262 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACTCTTGAGGTGGAGCCCAGT 630321 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || ||||| || Sbjct 630322 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 630381 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | |||||||| || || |||||||| ||| | | | |||| || || ||| Sbjct 630382 CAGAGGCTCATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 630441 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || ||||| || || ||| ||||| |||| ||| | || ||| Sbjct 630442 ATCCAGAAAGAATCCACCCTGCACCTGGTGCTGCGCTTGAGAGGTGGC 630489 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || | |||||||| || || | || ||||| || || || Sbjct 631174 ATGCAGATCTTCGTGAAGCCCCTAACCGGCAAGACCGTCACACTCGAGGTGGAGCCCCGT 631233 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| |||| |||||| || || ||||| || Sbjct 631234 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACACAGAAGGCATTCCCCCCGACCAG 631293 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | |||||||| ||||||||||| || ||| | | | |||| || || || Sbjct 631294 CAGAGGCTCATCTTTGCTGGGAAACAGCTAGAAGATGGCCGCACCCTGTCCGACTACAAT 631353 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||| ||||| || || || ||| ||||| |||| Sbjct 631354 ATTCAGAAGGAGTCTACCCTGCACCTGGTGCTGCG 631388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449845203800760