Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29]
9,317 sequences; 2,270,567,745 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq5 134 9e-27
seq780 125 5e-24
>seq5
Length=7401140
Score = 134 bits (148), Expect = 9e-27
Identities = 169/230 (73%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|| || ||||| | ||| |||||||| | |||| || ||||| ||||| ||||| ||
Sbjct 630488 CCACCTCTCAAGCGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 630429
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
||| |||| |||| ||||| |||||||| || ||||| || | |||||||| | ||
Sbjct 630428 AGGGTGCGGCCATCTTCCAGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 630369
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928
| ||||||||||| | || || || || || || || | ||| ||| ||| |
Sbjct 630368 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCAC--ATTCTCAATGGTGTCACTGGGCTCCA 630311
Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
| |||| || |||||||| || || |||||||| || ||||||||||||
Sbjct 630310 CCTCAAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 630261
Score = 96.9 bits (106), Expect = 2e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|| || ||||| | ||| |||||||| | ||| |||||||||||| || ||||| ||
Sbjct 630716 CCACCTCTCAAGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGAATATTGTAGTCGGAC 630657
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
||| |||| |||| || || || || || || ||||| || | |||||||| | ||
Sbjct 630656 AGGGTGCGGCCATCTTCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 630597
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930
| || || |||| | || || || ||| | || | ||| || ||| ||
Sbjct 630596 ATGCCTTCTGTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACGGGGCTCCACC 630537
Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
|| | || | |||||| || || |||| ||| || ||||||||||||
Sbjct 630536 TCGAGTGTGACGGTCTTGCCGGTTAGGGGCTTCACGAAGATCTGCATG 630489
Score = 96.9 bits (106), Expect = 2e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|| || ||||| | ||| |||||||| | ||| |||||||||||| || ||||| ||
Sbjct 630944 CCACCTCTCAAGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGAATATTGTAGTCGGAC 630885
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
||| |||| |||| || || || || || || ||||| || | |||||||| | ||
Sbjct 630884 AGGGTGCGGCCATCTTCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 630825
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930
| || || |||| | || || || ||| | || | ||| || ||| ||
Sbjct 630824 ATGCCTTCTGTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACGGGGCTCCACC 630765
Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
|| | || | |||||| || || |||| ||| || ||||||||||||
Sbjct 630764 TCGAGTGTGACGGTCTTGCCGGTTAGGGGCTTCACGAAGATCTGCATG 630717
Score = 96.9 bits (106), Expect = 2e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|| || ||||| | ||| |||||||| | ||| |||||||||||| || ||||| ||
Sbjct 631172 CCACCTCTCAAGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGAATATTGTAGTCGGAC 631113
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
||| |||| |||| || || || || || || ||||| || | |||||||| | ||
Sbjct 631112 AGGGTGCGGCCATCTTCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 631053
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930
| || || |||| | || || || ||| | || | ||| || ||| ||
Sbjct 631052 ATGCCTTCTGTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACGGGGCTCCACC 630993
Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
|| | || | |||||| || || |||| ||| || ||||||||||||
Sbjct 630992 TCGAGTGTGACGGTCTTGCCGGTTAGGGGCTTCACGAAGATCTGCATG 630945
Score = 96.9 bits (106), Expect = 2e-15
Identities = 160/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 34748 TTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCC 34807
|| || ||||||| | ||| |||||||| | ||| |||||||||||| || |||||
Sbjct 631403 TTACCACCCCTCAGGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGAATATTGTAGTCG 631344
Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867
|| ||| |||| |||| || || || || || || ||||| || | |||||||| |
Sbjct 631343 GACAGGGTGCGGCCATCTTCTAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCGGGG 631284
Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCG 34927
|| | || || |||| | || || || ||| | || | ||| || |||
Sbjct 631283 GGAATGCCTTCTGTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACGGGGCTCC 631224
Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
|| || | || | |||||| || || |||| ||| || ||||||||||||
Sbjct 631223 ACCTCGAGTGTGACGGTCTTGCCGGTTAGGGGCTTCACGAAGATCTGCATG 631173
>seq780
Length=1004500
Score = 125 bits (138), Expect = 5e-24
Identities = 167/230 (73%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|| ||||| | | ||| ||||| || | |||| |||||||| ||||| ||||| ||
Sbjct 815152 CCACCCCTGAGACGCAGCACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 815211
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
||| |||| |||| || || ||||| ||||| |||||||| | |||||||| | ||
Sbjct 815212 AGGGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 815271
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928
| || || ||||| | || || || || || || || | ||| ||| ||| |
Sbjct 815272 ATGCCTTCTTTGTCCTGGATCTTAGCCTTCAC--ATTCTCAATGGTGTCACTGGGCTCAA 815329
Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
| || | ||| |||||||| || || |||||||| |||||||||||||||
Sbjct 815330 CCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 815379
Score = 125 bits (138), Expect = 5e-24
Identities = 167/230 (73%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|| ||||| | | ||| |||||||| | |||| |||||||| ||||| ||||| ||
Sbjct 815608 CCGCCCCTGAGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 815667
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
||| |||| |||| || || ||||| ||||| |||||||| | |||||||| | ||
Sbjct 815668 AGGGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 815727
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928
| || || ||||| | || || || || || || || | ||| ||| ||| |
Sbjct 815728 ATGCCTTCTTTGTCCTGGATCTTAGCCTTCAC--ATTCTCAATGGTGTCACTGGGCTCAA 815785
Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
| || | ||| |||||||| || || |||||||| || ||||||||||||
Sbjct 815786 CCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 815835
Score = 114 bits (126), Expect = 8e-21
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|| ||||| | | ||| ||||| || | |||| |||||||| ||||| ||||| ||
Sbjct 815380 CCGCCCCTGAGACGCAGCACCAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 815439
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
||| |||| |||| || || ||||| || || |||||||| | |||||||| | ||
Sbjct 815440 AGGGTGCGGCCATCTTCTAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 815499
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930
| || || ||||| | || || || ||| | || | ||| ||| ||| ||
Sbjct 815500 ATGCCTTCTTTGTCCTGGATCTTAGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACC 815559
Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
|| | ||| |||||||| || || || ||||| || ||||||||||||
Sbjct 815560 TCGAGGGTGATGGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCATG 815607
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325655817277223
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |