Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq5 86.0 5e-12 >seq5 Length=7401140 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || | |||| ||||| ||| | || |||| |||| | | Sbjct 630490 ATGCAGATCTTCGTGAAGCCCCTAACCGGCAAGACCGTCACACTCGAGGTGGAGCCCCGT 630549 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || ||||| || | ||||||| | ||| || ||| Sbjct 630550 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACACAGAAGGCATTCCCCCCGACCAG 630609 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || |||||||| || || | | || || | |||||||| Sbjct 630610 CAGAGGCTCATCTTTGCTGGGAAACAGCTAGAAGATGGCCGCACCCTGTCCGACTACAAT 630669 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| ||||||||||| ||||| ||||| || | ||| |||| || Sbjct 630670 ATTCAGAAGGAGTCTACCCTGCACCTGGTGCTGCGCTTGAGAGGTGG 630716 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || | |||| ||||| ||| | || |||| |||| | | Sbjct 630718 ATGCAGATCTTCGTGAAGCCCCTAACCGGCAAGACCGTCACACTCGAGGTGGAGCCCCGT 630777 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || ||||| || | ||||||| | ||| || ||| Sbjct 630778 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACACAGAAGGCATTCCCCCCGACCAG 630837 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || |||||||| || || | | || || | |||||||| Sbjct 630838 CAGAGGCTCATCTTTGCTGGGAAACAGCTAGAAGATGGCCGCACCCTGTCCGACTACAAT 630897 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| ||||||||||| ||||| ||||| || | ||| |||| || Sbjct 630898 ATTCAGAAGGAGTCTACCCTGCACCTGGTGCTGCGCTTGAGAGGTGG 630944 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || | |||| ||||| ||| | || |||| |||| | | Sbjct 630946 ATGCAGATCTTCGTGAAGCCCCTAACCGGCAAGACCGTCACACTCGAGGTGGAGCCCCGT 631005 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || ||||| || | ||||||| | ||| || ||| Sbjct 631006 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACACAGAAGGCATTCCCCCCGACCAG 631065 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || |||||||| || || | | || || | |||||||| Sbjct 631066 CAGAGGCTCATCTTTGCTGGGAAACAGCTAGAAGATGGCCGCACCCTGTCCGACTACAAT 631125 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| ||||||||||| ||||| ||||| || | ||| |||| || Sbjct 631126 ATTCAGAAGGAGTCTACCCTGCACCTGGTGCTGCGCTTGAGAGGTGG 631172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398831507165413