Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq124 95.1 9e-14 seq861 89.7 4e-12 seq16 89.7 4e-12 >seq124 Length=3518557 Score = 95.1 bits (104), Expect = 9e-14 Identities = 222/329 (67%), Gaps = 6/329 (2%) Strand=Plus/Plus Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836 ||||| || || ||||||||||||||||| | | | || |||| ||| |||||||| Sbjct 2049559 GCACCGTAAGCTACAGCTTCATCAGGATTGATGCTCTTGTTCAGTTCTTTGCCATTGAAG 2049618 Query 281837 AAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 281895 || | | || |||| ||| | ||| || || |||| || || ||||| ||||| || Sbjct 2049619 AAGTCTTGTAGGAGTT-TCTGAATCTTTGGGATGCGAGTGGACCCACCAACCAATACTAT 2049677 Query 281896 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 281955 || || | ||| ||||| || || || | |||| || | || || ||||| || || Sbjct 2049678 GTCGTGGATCTGGGATTTGTCGAGCTTGGCATCCCGCAAGGCCTTCTCCACGGGGTCCAG 2049737 Query 281956 ACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT- 282014 | | | |||| || | | | ||||| || ||||| || || ||| | Sbjct 2049738 CGTACCACGGAACAGATCAGCATTCAACTCTTCAAAGCGAGCTC--GTGTGATTGAGGTG 2049795 Query 282015 TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGAT 282073 || || ||||| || || | | |||||||| ||||| | | || || || || Sbjct 2049796 TAGAAGTCAATGCCCTCATAGAGAGAATCAATCTCAATACTGGCCTGCGTGCTGGAGGAG 2049855 Query 282074 AGTGCACGTTTAGCACGTTCACATGCTGT 282102 || | ||| || ||||||||||||||||| Sbjct 2049856 AGGGTACGCTTTGCACGTTCACATGCTGT 2049884 Score = 95.1 bits (104), Expect = 9e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | |||||| |||| ||||||||| ||||||||||| || |||| | || Sbjct 2050237 TTTTTGTCTAAACCATAAGCAATAGCAGCAGCTGTTGGTTCATTGATGATTCGGAGCACG 2050296 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||| ||||| | || |||||||| ||||| || | || || || || || || Sbjct 2050297 TTGAGACCTGCAATAGTACCAGCATCTTTTGTGGCCTGGCGCTGGGAGTCATTGAAGTAG 2050356 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 || || ||||| | || |||| Sbjct 2050357 GCTGGTACAGTGACCACAGCAT 2050378 Score = 87.8 bits (96), Expect = 1e-11 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 |||| ||||||||| || ||||||||||| | |||||| ||||||||||| ||||| || Sbjct 2048403 GCAGACACATTAAGGATGCCATTGGCATCAATATCAAAAGTGACTTCAATCTGAGGTACG 2048462 Query 281486 CCTCTCTGAGCAGGTGGGATCCC 281508 ||||| |||| || ||||| || Sbjct 2048463 CCTCTAGGAGCTGGGGGGATGCC 2048485 >seq861 Length=860652 Score = 89.7 bits (98), Expect = 4e-12 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 ||| || || || | || ||||| |||||||| |||||| | ||| | | ||||| Sbjct 702493 TGTTGTTGCTACTGTGGCTTTTGGAATGGGTATCAATAAAGCAGATATCCGGAGAGTTAT 702552 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 |||||| ||||| || ||| | || ||| || |||||||||||||| ||||| || || Sbjct 702553 TCATTATGGAGCCCCTAAGGAAATGGAATCATACTATCAAGAAATTGGAAGAGCTGGCCG 702612 Query 131296 TGATGGA 131302 ||||||| Sbjct 702613 TGATGGA 702619 >seq16 Length=6129213 Score = 89.7 bits (98), Expect = 4e-12 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 282321 CTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 282380 ||||||||| ||||| | |||||| || || |||||||||||||| |||||||| | Sbjct 3489675 CTTTGTCTTCAGACTTATCTAAACCATAAGCCAAGGCAGCAGCAGTTGGCTCATTAATCA 3489616 Query 282381 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTG 282429 ||||| |||||| | ||||||||| ||| ||||| || || || || Sbjct 3489615 CTCTCAGAACATTCAATCCAGCAATTTGTCCGGCATCCTTGGTAGCCTG 3489567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740172974673642