Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alligator_20sinensis_20[refseq_20GCF_5F000455745.1_202013-08-29] 9,317 sequences; 2,270,567,745 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq910 123 5e-23 >seq910 Length=787505 Score = 123 bits (136), Expect = 5e-23 Identities = 124/161 (77%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 58379 GCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCATA 58438 || ||||||||||||||| | || ||||| || |||||||| || ||||| |||||||| Sbjct 100831 GCTTTATGGTGGTACTATGTCTCCAAAGGAATTGAATACTTGGACACAGTATTTTTCATC 100772 Query 58439 CTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTATGTTT 58498 || |||| || ||||| || | || || || || || |||||||||| ||| ||||| Sbjct 100771 CTGCGGAAGAAATTTAACCAAATCAGTTTCCTTCATGTTTATCATCATTGTACCATGTTC 100712 Query 58499 ACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539 || || | ||| | || || || ||| |||||||||| || Sbjct 100711 ACCTTGTGGTGGATTGGAATCAAGTGGGTTGCAGGAGGACA 100671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903305986473120